Home
Welcome to the NGSViewer wiki!
NGSViewer is an R-Shiny based website for viewing RNA-Seq and microarray data that has been analysed using our pipeline.
The input for this website is in the form of a list saved as an RData/RDS object. The list includes -
- Eset with expression, feature and sample information
- Differential expression results from limma
- GSEA results from camera
- GO results from topGO
- Pathway analysis results from SPIA and ReactomePA.
NGSViewer reads in this input data object and enables users to view and interact with their data. Apart from accessing the raw data and the analysis results, users can also download several like PCA-plots, volcano plots and heatmaps
