Code

Dev#44

Code

Merged

carsen-stringer merged 127 commits intomainMouseLand/facemap:mainfrom devMouseLand/facemap:devCopy head branch name to clipboardMar 17, 2022

+2,705-935

Commits

Commits on Jun 14, 2021

• add tqdm

  Atika-Syeda

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  62b7833

• multivideo test fix

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  1ae320b

Commits on Jun 16, 2021

• pytest edit

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  d17dcb6

Commits on Jun 17, 2021

• sbin param in process

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• online tests working

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• setup.py edit

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  f278afd

• mkl-fft vers

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• setup edit

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  261b76c

• Update test_and_deploy.yml

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  c9dc7c3

• setup edit

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• Merge branch 'dev' of https://github.com/MouseLand/facemap into dev

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  cb8e72e

• setup edit

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  e74bf7a

• test py3.6 only

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  4592771

• Update test_and_deploy.yml

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  1baaae9

• test py3.6 only

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  1719362

• Update setup.py

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  e5e5fe0

• Update tox.ini

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  34c230d

• Update test_and_deploy.yml

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  f2ae586

• Update setup.py

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Commits on Jun 21, 2021

• removing mkl-fft

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  7cdf468

• removing mkl-fft

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  aac6563

• numba in tox

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  bc64725

• all deps in tox

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  cb773c3

• all deps in tox

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  9a1e031

• update test

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  7b4e018

• update pytqtgraph

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  ba673da

Commits on Jun 24, 2021

• update branch

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  339e67c

Commits on Jul 12, 2021

• process.run usage

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  cd3e735

Commits on Aug 5, 2021

• Update README.md

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  e6eb5ad

• Update README.md

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  e664e45

• Update README.md

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• Update README.md

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  559141e

Commits on Aug 13, 2021

• unet model

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  bdf7d1e

• fix merge

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  611a58c

Commits on Aug 25, 2021

• Update README.md

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  55a0d11

Commits on Aug 26, 2021

• Update README.md

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  d1d7c3d

• Update README.md

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  a735e94

• transforms file

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  c2fdfc2

• merge

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  82fd33a

• bounding box functions

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  2107682

Commits on Aug 27, 2021

• bbox complete

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Commits on Aug 30, 2021

• predict labels and wrtie df

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  5804a49

• tutorial notebooks

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  72659b9

• Update test_and_deploy.yml

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  37dd678

• save and plot pose

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  45001c2

• pull remote change Merge branch 'dev' of ssh://github.com/MouseLand/facemap into dev

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  54d6c2c

Commits on Aug 31, 2021

• pose command line - part implementation

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  28424e3

Commits on Sep 13, 2021

• pose GUI/CLI partial implementation

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  2245404

• pose GUI/CLI partial implementation II

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  ee355cc

Commits on Sep 16, 2021

• facemap setup [gui]

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  cd9d01e

• Update README.md

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  b633447

• pose GUI/CLI partial implementation III

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  cecc30b

• pose GUI/CLI partial implementation III

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  0f39feb

Commits on Nov 22, 2021

• user defined bbox adjustable

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  a070766

• fixed ROI creation

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  54332ae

Commits on Nov 23, 2021

• cv2 bbox method

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  1ba03e0

• correct bbox selection and pred

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  ec36845

Commits on Nov 29, 2021

• corrected bbox cropping

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  3dbc547

Commits on Nov 30, 2021

• CPU batch processing and likelihood

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  addbdcd

• minor edits

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  0b93d49

• edits for ubuntu & gpu

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  bc1d7ff

Commits on Dec 10, 2021

• zoom options

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  96a1975

Commits on Dec 11, 2021

• minor edit

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  81681b7

Commits on Dec 12, 2021

• using pyqt instead of opencv for pose bbox

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  908200b

Commits on Dec 13, 2021

• adjusted cropping projection

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  7e0d937

• using opencv headless

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  5f46b43

Commits on Dec 14, 2021

• highlight point w/ video playback

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  030d457

Commits on Dec 16, 2021

• pose estimation w/o bbox

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  e418e6c

Commits on Dec 17, 2021

• plot running speed trace

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Commits on Dec 18, 2021

• ethograms plot

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  04ba38d

• organize code chunks

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Commits on Dec 20, 2021

• cluster labels trace on p1

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Commits on Dec 30, 2021

• bbox for processing multiple videos

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  473c042

• pose estimates for multiview simultaneous recordings

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  56b50dd

• load multiview pose files

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  640d1c8

Commits on Jan 1, 2022

• process batch includes pose estimation

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  698d0eb

• fix tracker button position

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  339e362

Commits on Jan 5, 2022

• fix svd calculation

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  58f70b8

Commits on Jan 6, 2022

• batchlist and pyqt5 imports

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  4cb1e90

• cluster legend adjustment

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  d6740dc

Commits on Jan 7, 2022

• reload traces

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  e70f2d7

Commits on Jan 8, 2022

• cluster labels

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  385b2a2

Commits on Jan 10, 2022

• inference speed improvements

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  149df7b

Commits on Jan 13, 2022

• inference speed improvement

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  8fd861c

Commits on Jan 17, 2022

• pupil, blink, and run process_roi correction

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  c4cd358

Commits on Mar 8, 2022

• facemap_network

  Show description for 501902d
  Atika-Syeda

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  501902d

• time inference

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  7ac4787

• time inference edit

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• 400 fps model

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Commits on Mar 10, 2022

• Update README.md

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• Update README.md

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• Update README.md

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Commits on Mar 12, 2022

• tsne upload

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  45021f9

• Merge branch 'dev' of ssh://github.com/MouseLand/facemap into dev

  Atika-Syeda

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Commits on Mar 13, 2022

• download pose model from url

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• time prediction

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• adding progress bar for pose

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• keep progress visible

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• progressbar edit

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• progressbar edit II

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• move svd details

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• pose tracking section

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• Detailed instructions for installation

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  48781aa

• moving details from main readme

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• Update README.md

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• add torchvision

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• add torchvision

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• Update installation.md

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• matlab instructions

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  87853ca

• separate instructions for MATLAB

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  d5d2105

• Update svd_tutorial_matlab.md

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• Update svd_tutorial_matlab.md

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• Create svd_python_tutorial.md

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• Create pose_tracking_tutorial.md

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• example face view images

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• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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• place images

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• readme update

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• readme update

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  03353b0

• readme fix links

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• bug fix: svd process

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• tracker gif

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Commits on Mar 14, 2022

• removing hdbscan

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• pose gui readme

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