Setup refactor #22
Merged
Setup refactor #22
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…ge specific conf files.
…gives an erroneous failure the next set up completes nearly instantly.
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This pull request implements most of issue #21. I'll leave further discussion there about the changes and what remains.
One important note is that this merge will require re-generating configuration files. There's a check in place which will notify you if conf re-generation is needed (it's checked when setup.sh is run).