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Mismatched Protein Annotations Due to ID Format Inconsistencies Between BLAST and GFF3 Files
#513
opened Dec 12, 2024 by
joana-morais
agat_sp_flag_premature_stop_codons.pl mostly flags genes without premature stop codons
#504
opened Oct 17, 2024 by
JWDebler
Error with GFF input file when using agat_sp_add_introns.pl and agat_convert_sp_gxf2gxf.pl
#493
opened Sep 25, 2024 by
mspopecki
The agat_sp_filter_feature_by_attribute_value.pl installed by conda is an old version
#492
opened Sep 19, 2024 by
dongdongdong0203
agat_sp_extract_sequences.pl Could not open index file but it exists
#479
opened Aug 30, 2024 by
hans-vg
Some transcripts are missing agat_convert_sp_gxf2gxf.pl
#478
opened Aug 22, 2024 by
IrinaVKuznetsova
How to merge two genes with overlapping positions but no overlapping CDS?
#468
opened Jun 20, 2024 by
binzhengbin
agat_sp_extract_sequences.pl: support for multicistronic transcripts.
#451
opened Apr 8, 2024 by
jdcla
agat_sp_extract_sequences.pl does not incorporate CDS feature ID in headers
enhancement
New feature or request
#450
opened Apr 8, 2024 by
jdcla
Creating a Hints file for use in Augustus from a gff file
help wanted
Extra attention is needed
#177
opened Sep 19, 2021 by
sanyalab
agat_sp_statistics.pl add an option to collapse overlapping part
enhancement
New feature or request
#26
opened Mar 3, 2020 by
Juke34
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