pbvalidate

Validate PacBio datasets

pbvalidate is a tool available with the SMRT Tools / SMRT Link package. See SMRT Tools for usage options.

Validate a PacBio BAM file:

pbvalidate ${PREFIX}.subreads.bam

Validate a PacBio Fasta file:

pbvalidate ${PREFIX}.fasta

Validate a PacBio XML data set:

pbvalidate ${PREFIX}.subreadset.xml