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Add certificate template document and images
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johnne committed Nov 29, 2023
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56 changes: 56 additions & 0 deletions pages/certificate.qmd
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---
title: Course Certificate
subtitle: Tools for Reproducible Research
format:
pdf:
theme: flatly
mainfont: Arial
fontsize: 11pt
number-sections: false
fig-align: center
papersize: a4
params:
location: ''
participant: ''
month_start: ''
day_start: ''
month_end: ''
day_end: ''
year: ''
engine: knitr
---

![NBIS logo](images/nbislogo_green_txt_f34bc9d3c3.png){height=50}
\hspace{4em}
![SciLifeLab logo](images/SciLifeLab_Logotype_Green_POS.png){height=50}
\hspace{4em}
![Elixir logo](images/elixir_sweden_white_background.png){height=50}

This is to certify that **`r params$participant`** has successfully taken part in the NBIS/ELIXIR course

**Tools for Reproducible Research**

The course was held `r params$location`, `r params$month_start` `r params$day_start` - `r params$month_end` `r params$day_end` `r params$year`. It consisted of lectures, computer exercises and group discussions.

The following subjects and fields were covered:

- Use good practices for data analysis and management
- Clearly organise their bioinformatic projects
- Use the version control system Git to track and collaborate on code
- Use the package and environment manager Conda
- Use and develop workflows with Snakemake and Nextflow
- Use Quarto and Jupyter Notebooks to document and generate automated reports
- Use Docker and Singularity/Apptainer to distribute containerized computational environments

**Examination**: Presence during all the lectures and computer/practical exercises.


The course was arranged by the National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory (SciLifeLab) and ELIXIR-Europe.

\-\-\-\
*Stockholm, `r params$month_end` `r params$day_end`, `r params$year`*

*Erik Fasterius & John Sundh*\
*Dept of Biochemistry and Biophysics*\
*NBIS, Science for Life Laboratory, Stockholm University*\
*Course examiners*
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