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Merge pull request #89 from rasools/OMICSINT_H24
Updating course pages
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,308 @@ | ||
| <!DOCTYPE html> | ||
| <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head> | ||
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| <meta charset="utf-8"> | ||
| <meta name="generator" content="quarto-1.3.433"> | ||
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| <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes"> | ||
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| <title>contact</title> | ||
| <style> | ||
| code{white-space: pre-wrap;} | ||
| span.smallcaps{font-variant: small-caps;} | ||
| div.columns{display: flex; gap: min(4vw, 1.5em);} | ||
| div.column{flex: auto; overflow-x: auto;} | ||
| div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} | ||
| ul.task-list{list-style: none;} | ||
| ul.task-list li input[type="checkbox"] { | ||
| width: 0.8em; | ||
| margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ | ||
| vertical-align: middle; | ||
| } | ||
| </style> | ||
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| <script src="contact_files/libs/clipboard/clipboard.min.js"></script> | ||
| <script src="contact_files/libs/quarto-html/quarto.js"></script> | ||
| <script src="contact_files/libs/quarto-html/popper.min.js"></script> | ||
| <script src="contact_files/libs/quarto-html/tippy.umd.min.js"></script> | ||
| <script src="contact_files/libs/quarto-html/anchor.min.js"></script> | ||
| <link href="contact_files/libs/quarto-html/tippy.css" rel="stylesheet"> | ||
| <link href="contact_files/libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"> | ||
| <script src="contact_files/libs/bootstrap/bootstrap.min.js"></script> | ||
| <link href="contact_files/libs/bootstrap/bootstrap-icons.css" rel="stylesheet"> | ||
| <link href="contact_files/libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="light"> | ||
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| </head> | ||
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| <body class="fullcontent"> | ||
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| <div id="quarto-content" class="page-columns page-rows-contents page-layout-article"> | ||
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| <main class="content" id="quarto-document-content"> | ||
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| <header id="title-block-header" class="quarto-title-block default"> | ||
| <div class="quarto-title"> | ||
| <h1 class="title">contact</h1> | ||
| </div> | ||
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| <div class="quarto-title-meta"> | ||
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| </div> | ||
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| </header> | ||
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| <section id="contact" class="level4"> | ||
| <h4 class="anchored" data-anchor-id="contact"><img border="0" src="https://www.svgrepo.com/show/35048/email.svg" width="25" height="25"> Contact</h4> | ||
| <p>For information about this course please contact <a href="https://www.chalmers.se/en/persons/rasools/?tab=0">Rasool Saghaleyni</a> or through the email <code>edu.omics-integration[ at ]nbis.se</code>.</p> | ||
| <p>For further information about NBIS support, training and infrastructure, see our <a href="https://nbis.se/">webpage</a>.</p> | ||
| </section> | ||
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| </main> | ||
| <!-- /main column --> | ||
| <script id="quarto-html-after-body" type="application/javascript"> | ||
| window.document.addEventListener("DOMContentLoaded", function (event) { | ||
| const toggleBodyColorMode = (bsSheetEl) => { | ||
| const mode = bsSheetEl.getAttribute("data-mode"); | ||
| const bodyEl = window.document.querySelector("body"); | ||
| if (mode === "dark") { | ||
| bodyEl.classList.add("quarto-dark"); | ||
| bodyEl.classList.remove("quarto-light"); | ||
| } else { | ||
| bodyEl.classList.add("quarto-light"); | ||
| bodyEl.classList.remove("quarto-dark"); | ||
| } | ||
| } | ||
| const toggleBodyColorPrimary = () => { | ||
| const bsSheetEl = window.document.querySelector("link#quarto-bootstrap"); | ||
| if (bsSheetEl) { | ||
| toggleBodyColorMode(bsSheetEl); | ||
| } | ||
| } | ||
| toggleBodyColorPrimary(); | ||
| const icon = ""; | ||
| const anchorJS = new window.AnchorJS(); | ||
| anchorJS.options = { | ||
| placement: 'right', | ||
| icon: icon | ||
| }; | ||
| anchorJS.add('.anchored'); | ||
| const isCodeAnnotation = (el) => { | ||
| for (const clz of el.classList) { | ||
| if (clz.startsWith('code-annotation-')) { | ||
| return true; | ||
| } | ||
| } | ||
| return false; | ||
| } | ||
| const clipboard = new window.ClipboardJS('.code-copy-button', { | ||
| text: function(trigger) { | ||
| const codeEl = trigger.previousElementSibling.cloneNode(true); | ||
| for (const childEl of codeEl.children) { | ||
| if (isCodeAnnotation(childEl)) { | ||
| childEl.remove(); | ||
| } | ||
| } | ||
| return codeEl.innerText; | ||
| } | ||
| }); | ||
| clipboard.on('success', function(e) { | ||
| // button target | ||
| const button = e.trigger; | ||
| // don't keep focus | ||
| button.blur(); | ||
| // flash "checked" | ||
| button.classList.add('code-copy-button-checked'); | ||
| var currentTitle = button.getAttribute("title"); | ||
| button.setAttribute("title", "Copied!"); | ||
| let tooltip; | ||
| if (window.bootstrap) { | ||
| button.setAttribute("data-bs-toggle", "tooltip"); | ||
| button.setAttribute("data-bs-placement", "left"); | ||
| button.setAttribute("data-bs-title", "Copied!"); | ||
| tooltip = new bootstrap.Tooltip(button, | ||
| { trigger: "manual", | ||
| customClass: "code-copy-button-tooltip", | ||
| offset: [0, -8]}); | ||
| tooltip.show(); | ||
| } | ||
| setTimeout(function() { | ||
| if (tooltip) { | ||
| tooltip.hide(); | ||
| button.removeAttribute("data-bs-title"); | ||
| button.removeAttribute("data-bs-toggle"); | ||
| button.removeAttribute("data-bs-placement"); | ||
| } | ||
| button.setAttribute("title", currentTitle); | ||
| button.classList.remove('code-copy-button-checked'); | ||
| }, 1000); | ||
| // clear code selection | ||
| e.clearSelection(); | ||
| }); | ||
| function tippyHover(el, contentFn) { | ||
| const config = { | ||
| allowHTML: true, | ||
| content: contentFn, | ||
| maxWidth: 500, | ||
| delay: 100, | ||
| arrow: false, | ||
| appendTo: function(el) { | ||
| return el.parentElement; | ||
| }, | ||
| interactive: true, | ||
| interactiveBorder: 10, | ||
| theme: 'quarto', | ||
| placement: 'bottom-start' | ||
| }; | ||
| window.tippy(el, config); | ||
| } | ||
| const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]'); | ||
| for (var i=0; i<noterefs.length; i++) { | ||
| const ref = noterefs[i]; | ||
| tippyHover(ref, function() { | ||
| // use id or data attribute instead here | ||
| let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href'); | ||
| try { href = new URL(href).hash; } catch {} | ||
| const id = href.replace(/^#\/?/, ""); | ||
| const note = window.document.getElementById(id); | ||
| return note.innerHTML; | ||
| }); | ||
| } | ||
| let selectedAnnoteEl; | ||
| const selectorForAnnotation = ( cell, annotation) => { | ||
| let cellAttr = 'data-code-cell="' + cell + '"'; | ||
| let lineAttr = 'data-code-annotation="' + annotation + '"'; | ||
| const selector = 'span[' + cellAttr + '][' + lineAttr + ']'; | ||
| return selector; | ||
| } | ||
| const selectCodeLines = (annoteEl) => { | ||
| const doc = window.document; | ||
| const targetCell = annoteEl.getAttribute("data-target-cell"); | ||
| const targetAnnotation = annoteEl.getAttribute("data-target-annotation"); | ||
| const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation)); | ||
| const lines = annoteSpan.getAttribute("data-code-lines").split(","); | ||
| const lineIds = lines.map((line) => { | ||
| return targetCell + "-" + line; | ||
| }) | ||
| let top = null; | ||
| let height = null; | ||
| let parent = null; | ||
| if (lineIds.length > 0) { | ||
| //compute the position of the single el (top and bottom and make a div) | ||
| const el = window.document.getElementById(lineIds[0]); | ||
| top = el.offsetTop; | ||
| height = el.offsetHeight; | ||
| parent = el.parentElement.parentElement; | ||
| if (lineIds.length > 1) { | ||
| const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]); | ||
| const bottom = lastEl.offsetTop + lastEl.offsetHeight; | ||
| height = bottom - top; | ||
| } | ||
| if (top !== null && height !== null && parent !== null) { | ||
| // cook up a div (if necessary) and position it | ||
| let div = window.document.getElementById("code-annotation-line-highlight"); | ||
| if (div === null) { | ||
| div = window.document.createElement("div"); | ||
| div.setAttribute("id", "code-annotation-line-highlight"); | ||
| div.style.position = 'absolute'; | ||
| parent.appendChild(div); | ||
| } | ||
| div.style.top = top - 2 + "px"; | ||
| div.style.height = height + 4 + "px"; | ||
| let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter"); | ||
| if (gutterDiv === null) { | ||
| gutterDiv = window.document.createElement("div"); | ||
| gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter"); | ||
| gutterDiv.style.position = 'absolute'; | ||
| const codeCell = window.document.getElementById(targetCell); | ||
| const gutter = codeCell.querySelector('.code-annotation-gutter'); | ||
| gutter.appendChild(gutterDiv); | ||
| } | ||
| gutterDiv.style.top = top - 2 + "px"; | ||
| gutterDiv.style.height = height + 4 + "px"; | ||
| } | ||
| selectedAnnoteEl = annoteEl; | ||
| } | ||
| }; | ||
| const unselectCodeLines = () => { | ||
| const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"]; | ||
| elementsIds.forEach((elId) => { | ||
| const div = window.document.getElementById(elId); | ||
| if (div) { | ||
| div.remove(); | ||
| } | ||
| }); | ||
| selectedAnnoteEl = undefined; | ||
| }; | ||
| // Attach click handler to the DT | ||
| const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); | ||
| for (const annoteDlNode of annoteDls) { | ||
| annoteDlNode.addEventListener('click', (event) => { | ||
| const clickedEl = event.target; | ||
| if (clickedEl !== selectedAnnoteEl) { | ||
| unselectCodeLines(); | ||
| const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); | ||
| if (activeEl) { | ||
| activeEl.classList.remove('code-annotation-active'); | ||
| } | ||
| selectCodeLines(clickedEl); | ||
| clickedEl.classList.add('code-annotation-active'); | ||
| } else { | ||
| // Unselect the line | ||
| unselectCodeLines(); | ||
| clickedEl.classList.remove('code-annotation-active'); | ||
| } | ||
| }); | ||
| } | ||
| const findCites = (el) => { | ||
| const parentEl = el.parentElement; | ||
| if (parentEl) { | ||
| const cites = parentEl.dataset.cites; | ||
| if (cites) { | ||
| return { | ||
| el, | ||
| cites: cites.split(' ') | ||
| }; | ||
| } else { | ||
| return findCites(el.parentElement) | ||
| } | ||
| } else { | ||
| return undefined; | ||
| } | ||
| }; | ||
| var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]'); | ||
| for (var i=0; i<bibliorefs.length; i++) { | ||
| const ref = bibliorefs[i]; | ||
| const citeInfo = findCites(ref); | ||
| if (citeInfo) { | ||
| tippyHover(citeInfo.el, function() { | ||
| var popup = window.document.createElement('div'); | ||
| citeInfo.cites.forEach(function(cite) { | ||
| var citeDiv = window.document.createElement('div'); | ||
| citeDiv.classList.add('hanging-indent'); | ||
| citeDiv.classList.add('csl-entry'); | ||
| var biblioDiv = window.document.getElementById('ref-' + cite); | ||
| if (biblioDiv) { | ||
| citeDiv.innerHTML = biblioDiv.innerHTML; | ||
| } | ||
| popup.appendChild(citeDiv); | ||
| }); | ||
| return popup.innerHTML; | ||
| }); | ||
| } | ||
| } | ||
| }); | ||
| </script> | ||
| </div> <!-- /content --> | ||
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| </body></html> |
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