Merge pull request #103 from rasools/OMICSINT_H24

Add session gems workflow

.github/workflows/docker-build-lab-gems-amd.yml

@@ -35,9 +35,9 @@ jobs:
         with:
           context: ./session_gems
           file: session_gems/Dockerfile
-          platforms: linux/amd64
+          platforms: linux/arm64
           push: true
-          tags: docker.io/rasoolsnbis/omicsint_h24:session_gems
+          tags: docker.io/rasoolsnbis/omicsint_h24:session_gems_arm
 
       - name: Inspect Docker Image
-        run: docker buildx imagetools inspect docker.io/rasoolsnbis/omicsint_h24:session_gems
+        run: docker buildx imagetools inspect docker.io/rasoolsnbis/omicsint_h24:session_gems_arm

.github/workflows/docker-build-lab-gems-arm.yml

@@ -0,0 +1,43 @@
+name: Build and Push Docker Image for Session Gems
+
+on:
+  push:
+    paths:
+      - 'session_gems/**'
+    branches:
+      - OMICSINT_H24
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    if: github.repository == 'NBISweden/workshop_omics_integration'
+
+    steps:
+      # Checkout the repository
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      # Set up Docker Buildx for multi-platform builds
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+
+      # Log in to Docker Hub using the secrets
+      - name: Log in to Docker Hub
+        uses: docker/login-action@v2
+        with:
+          username: ${{ secrets.DOCKER_HUB_USERNAME }} 
+          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
+
+      # Build and push the Docker image for both amd64 and arm64
+      - name: Build and Push Docker Image for Session Gems
+        uses: docker/build-push-action@v4
+        with:
+          context: ./session_gems
+          file: session_gems/Dockerfile
+          platforms: linux/amd64
+          push: true
+          tags: docker.io/rasoolsnbis/omicsint_h24:session_gems_amd
+
+      - name: Inspect Docker Image
+        run: docker buildx imagetools inspect docker.io/rasoolsnbis/omicsint_h24:session_gems_amd

session_gems/Dockerfile

@@ -58,4 +58,4 @@ RUN /opt/conda/envs/gems/bin/jupyter notebook --generate-config && \
     echo "c.NotebookApp.open_browser = False" >> /home/jovyan/.jupyter/jupyter_notebook_config.py
 
 # Set the startup script as the entrypoint
-ENTRYPOINT ["/usr/local/bin/start-script.sh"]
+ENTRYPOINT ["/usr/local/bin/start-script.sh"]