updates in inline post and restart files and bug fix in ugwd (#27)

* add fh00 post control file, add restart output at specified forecast hours, ugwd bug fixes
* fv3atm #15:Add support for GEFS-Aerosols restart capability
* remove comment prints
* fix RunDuration in atmos fcst side
* update post_gfs with new post changes
* comment out print line
* point fv3 dycore to the latest NOAA-EMC dev/emc branch

atmos_model.F90

@@ -113,7 +113,8 @@ module atmos_model_mod
                               FV3GFS_diag_register, FV3GFS_diag_output,  &
                               DIAG_SIZE
 use fv_iau_mod,         only: iau_external_data_type,getiauforcing,iau_initialize
-use module_fv3_config,  only: output_1st_tstep_rst, first_kdt, nsout
+use module_fv3_config,  only: output_1st_tstep_rst, first_kdt, nsout,    &
+                              frestart, restart_endfcst
 
 !-----------------------------------------------------------------------
 
@@ -221,7 +222,8 @@ module atmos_model_mod
   logical,parameter :: flip_vc = .true.
 #endif
 
-  real(kind=IPD_kind_phys), parameter :: zero=0.0, one=1.0
+  real(kind=IPD_kind_phys), parameter :: zero = 0.0_IPD_kind_phys, &
+                                         one  = 1.0_IPD_kind_phys
 
 contains
 
@@ -944,17 +946,19 @@ end subroutine update_atmos_model_state
 subroutine atmos_model_end (Atmos)
   type (atmos_data_type), intent(inout) :: Atmos
 !---local variables
-  integer :: idx
+  integer :: idx, seconds
 #ifdef CCPP
   integer :: ierr
 #endif
 
 !-----------------------------------------------------------------------
 !---- termination routine for atmospheric model ----
 
-    call atmosphere_end (Atmos % Time, Atmos%grid)
-    call FV3GFS_restart_write (IPD_Data, IPD_Restart, Atm_block, &
-                               IPD_Control, Atmos%domain)
+    call atmosphere_end (Atmos % Time, Atmos%grid, restart_endfcst)
+    if(restart_endfcst) then
+      call FV3GFS_restart_write (IPD_Data, IPD_Restart, Atm_block, &
+                                 IPD_Control, Atmos%domain)
+    endif
 
 #ifdef CCPP
 !   Fast physics (from dynamics) are finalized in atmosphere_end above;
@@ -1457,6 +1461,24 @@ subroutine update_atmos_chemistry(state, rc)
         enddo
       enddo
 
+      ! -- zero out accumulated fields
+!$OMP parallel do default (none) &
+!$OMP             shared  (nj, ni, Atm_block, IPD_Control, IPD_Data) &
+!$OMP             private (j, jb, i, ib, nb, ix)
+      do j = 1, nj
+        jb = j + Atm_block%jsc - 1
+        do i = 1, ni
+          ib = i + Atm_block%isc - 1
+          nb = Atm_block%blkno(ib,jb)
+          ix = Atm_block%ixp(ib,jb)
+          IPD_Data(nb)%coupling%rainc_cpl(ix)  = zero
+          if (.not.IPD_Control%cplflx) then
+            IPD_Data(nb)%coupling%rain_cpl(ix) = zero
+            IPD_Data(nb)%coupling%snow_cpl(ix) = zero
+          end if
+        enddo
+      enddo
+
       if (IPD_Control%debug) then
         ! -- diagnostics
         write(6,'("update_atmos: prsi   - min/max/avg",3g16.6)') minval(prsi),   maxval(prsi),   sum(prsi)/size(prsi)

fv3_cap.F90

@@ -30,7 +30,7 @@ module fv3gfs_cap_mod
                                     calendar, calendar_type, cpl,            &
                                     force_date_from_configure,               &
                                     cplprint_flag,output_1st_tstep_rst,      &
-                                    first_kdt                            
+                                    first_kdt,num_restart_interval       
 
   use module_fv3_io_def,      only: num_pes_fcst,write_groups,app_domain,    &
                                     num_files, filename_base,                &
@@ -278,9 +278,16 @@ subroutine InitializeAdvertise(gcomp, importState, exportState, clock, rc)
     CALL ESMF_ConfigLoadFile(config=CF ,filename='model_configure' ,rc=RC)
     if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return
 !
-    CALL ESMF_ConfigGetAttribute(config=CF,value=restart_interval, &
-                                 label ='restart_interval:',rc=rc)
+    num_restart_interval = ESMF_ConfigGetLen(config=CF, label ='restart_interval:',rc=rc)
     if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return
+    if(mype == 0) print *,'af nems config,num_restart_interval=',num_restart_interval
+    if (num_restart_interval<=0) num_restart_interval = 1
+    allocate(restart_interval(num_restart_interval))
+    restart_interval = 0
+    CALL  ESMF_ConfigGetAttribute(CF,valueList=restart_interval,label='restart_interval:', &
+      count=num_restart_interval, rc=RC)
+    if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return
+    if(mype == 0) print *,'af nems config,restart_interval=',restart_interval
 !
     CALL ESMF_ConfigGetAttribute(config=CF,value=calendar, &
                                  label ='calendar:',rc=rc)
@@ -326,9 +333,8 @@ subroutine InitializeAdvertise(gcomp, importState, exportState, clock, rc)
                                    label ='app_domain:',rc=rc)
       if (ESMF_LogFoundError(rcToCheck=rc, msg=ESMF_LOGERR_PASSTHRU, line=__LINE__, file=__FILE__)) return
 
-      if(mype == 0) print *,'af nems config,restart_interval=',restart_interval, &
-      'quilting=',quilting,'write_groups=',write_groups,wrttasks_per_group,      &
-      'calendar=',trim(calendar),'calendar_type=',calendar_type
+      if(mype == 0) print *,'af nems config,quilting=',quilting,'write_groups=', &
+        write_groups,wrttasks_per_group,'calendar=',trim(calendar),'calendar_type=',calendar_type
 !
       CALL ESMF_ConfigGetAttribute(config=CF,value=num_files, &
                                    label ='num_files:',rc=rc)

gfsphysics/GFS_layer/GFS_driver.F90

@@ -422,7 +422,7 @@ subroutine GFS_initialize (Model, Statein, Stateout, Sfcprop,     &
       call cires_ugwp_init(Model%me,      Model%master, Model%nlunit,  Init_parm%logunit, &
                            Model%fn_nml,  Model%lonr,   Model%latr,    Model%levs,        &
                            Init_parm%ak,  Init_parm%bk, p_ref,         Model%dtp,         &
-                           Model%cdmbgwd, Model%cgwf,   Model%prslrd0, Model%ral_ts)
+                           Model%cdmbgwd(1:2), Model%cgwf,   Model%prslrd0, Model%ral_ts)
     endif
 #endif
 

gfsphysics/GFS_layer/GFS_physics_driver.F90

@@ -3184,9 +3184,13 @@ subroutine GFS_physics_driver                                 &
         dtdt(1:im,:) = Stateout%gt0(1:im,:)
       endif   ! end if_ldiag3d/cnvgwd
 
-      if (Model%ldiag3d) then
+      if (Model%ldiag3d .or. Model%cplchm) then
         dqdt(1:im,:,1) = Stateout%gq0(1:im,:,1)
-      endif   ! end if_ldiag3d
+      endif   ! end if_ldiag3d/cplchm
+
+      if (Model%cplchm) then
+        Coupling%dqdti(1:im,:) = zero
+      endif   ! end if_cplchm
 
 #ifdef GFS_HYDRO
       call get_phi(im, ix, levs, ntrac, Stateout%gt0, Stateout%gq0,    &

gfsphysics/GFS_layer/GFS_radiation_driver.F90

@@ -2116,18 +2116,40 @@ subroutine GFS_radiation_driver                             &
               Diag%fluxr(i,11-j) = Diag%fluxr(i,11-j) + tem0d * Statein%prsi(i,itop+kt)
               Diag%fluxr(i,14-j) = Diag%fluxr(i,14-j) + tem0d * Statein%prsi(i,ibtc+kb)
               Diag%fluxr(i,17-j) = Diag%fluxr(i,17-j) + tem0d * Statein%tgrs(i,itop)
+            enddo
+          enddo
 
 !       Anning adds optical depth and emissivity output
-              tem1 = 0.
-              tem2 = 0.
-              do k=ibtc,itop
-                tem1 = tem1 + cldtausw(i,k)      ! approx .55 mu channel
-                tem2 = tem2 + cldtaulw(i,k)      ! approx 10. mu channel
+          if (Model%lsswr .and. (nday > 0)) then
+            do j = 1, 3
+              do i = 1, IM
+                tem0d = raddt * cldsa(i,j)
+                itop  = mtopa(i,j) - kd
+                ibtc  = mbota(i,j) - kd
+                tem1 = 0.
+                do k=ibtc,itop
+                  tem1 = tem1 + cldtausw(i,k)      ! approx .55 um channel
+                enddo
+                Diag%fluxr(i,43-j) = Diag%fluxr(i,43-j) + tem0d * tem1
               enddo
-              Diag%fluxr(i,43-j) = Diag%fluxr(i,43-j) + tem0d * tem1
-              Diag%fluxr(i,46-j) = Diag%fluxr(i,46-j) + tem0d * (1.0-exp(-tem2))
             enddo
-          enddo
+          endif
+
+          if (Model%lslwr) then
+            do j = 1, 3
+              do i = 1, IM
+                tem0d = raddt * cldsa(i,j)
+                itop  = mtopa(i,j) - kd
+                ibtc  = mbota(i,j) - kd
+                tem2 = 0.
+                do k=ibtc,itop
+                  tem2 = tem2 + cldtaulw(i,k)      ! approx 10. um channel
+                enddo
+                Diag%fluxr(i,46-j) = Diag%fluxr(i,46-j) + tem0d * (1.0-exp(-tem2))
+              enddo
+            enddo
+          endif
+
         endif
 
       endif                                ! end_if_lssav

gfsphysics/physics/sflx.f

@@ -251,6 +251,7 @@ subroutine sflx                                                   &
       runoff2 = 0.0
       runoff3 = 0.0
       snomlt  = 0.0
+      rc      = 0.0
 
 !  --- ...  define local variable ice to achieve:
 !             sea-ice case,          ice =  1

gfsphysics/physics/ugwp_driver_v0.f

@@ -46,7 +46,9 @@ subroutine cires_ugwp_driver_v0(me,  master,
      &,                            rain
 
        real(kind=kind_phys), intent(in), dimension(im,levs) :: ugrs
-     &,        vgrs, tgrs, qgrs, prsi, prsl, prslk, phii, phil, del
+     &,        vgrs, tgrs, qgrs, prsl, prslk, phil, del
+       real(kind=kind_phys), intent(in), dimension(im,levs+1) :: prsi
+     &,        phii
 
 !      real(kind=kind_phys), intent(in) :: oro_stat(im,nmtvr)
        real(kind=kind_phys), intent(in), dimension(im) :: hprime, oc

io/FV3GFS_io.F90

@@ -157,10 +157,10 @@ subroutine FV3GFS_restart_write (IPD_Data, IPD_Restart, Atm_block, Model, fv_dom
     type(domain2d),              intent(in)    :: fv_domain
     character(len=32), optional, intent(in)    :: timestamp
 
-    !--- read in surface data from chgres 
+    !--- write surface data from chgres 
     call sfc_prop_restart_write (IPD_Data%Sfcprop, Atm_block, Model, fv_domain, timestamp)
 
-    !--- read in physics restart data
+    !--- write physics restart data
     call phys_restart_write (IPD_Restart, Atm_block, Model, fv_domain, timestamp)
 
   end subroutine FV3GFS_restart_write