-
Notifications
You must be signed in to change notification settings - Fork 0
Reference Knowledge Beacon as Prototype TKG
Richard Bruskiewich edited this page Apr 12, 2018
·
7 revisions
The Reference Knowledge Beacon ("RKB") serves as one feasible starting point for a TKG. On this page, we will try to compile the list of tasks (with links to repository issues) which will remodel (and document) the RKB as a sample TKG.
- Clone a copy of the reference Neo4j RKB database.
- Document the RKB Neo4j data model (i.e. Neo4j node and edge labels, properties and related details).
- Obtain Translator team feedback on the data model (suggested modifications to the data model)
- Rewrite the (node) concept types and predicates to emerging (Translator) Biolink Model ontology standards.
- Adapt RKB batch (flat file) data loading scripts for new TKG data model.
- Review Knowledge Beacon API (and/or perhaps the Knowledge Beacon Aggregator API) for possible changes or additions to support the TKG use cases.
- Document some initial "Knowledge Subgraph" export use cases (modelled after Clinical Outcome Pathways?)
- Implement a "Knowledge Subgraph" export/dump API endpoint and/or script (see also the Proposed draft specification for standardized Reasoning Tool API responses