Add R_LINTR_LINTER_FILE to lint action to point to global .lintr file #25
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| name: UBSAN/ASAN Checks | |
| on: | |
| pull_request: | |
| branches: [ "main" ] | |
| push: | |
| branches: [ "build-workflow" ] | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| sanitizer-check-asan: | |
| runs-on: ubuntu-latest | |
| env: | |
| CC: clang | |
| CXX: clang++ | |
| CXXFLAGS: "-fsanitize=address" | |
| LINK: clang++ | |
| ASAN: true | |
| UBSAN: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| ## Specific to package | |
| _R_CHECK_USE_VALGRIND_: true | |
| UBSAN_OPTIONS: "print_stacktrace=1" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Clang | |
| uses: egor-tensin/setup-clang@v1 | |
| with: | |
| version: latest | |
| platform: x64 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check with ASAN | |
| run: rcmdcheck::rcmdcheck(build_args = "--no-build-vignettes", args = c("--no-codoc", "--no-examples", "--no-manual", "--ignore-vignettes"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@v3 | |
| # with: | |
| # name: ${{ runner.os }}-asan-rrelease-results | |
| # path: check | |
| sanitizer-check-usan: | |
| runs-on: ubuntu-latest | |
| env: | |
| CC: clang | |
| CXX: clang++ | |
| CXXFLAGS: "-fsanitize=undefined" | |
| LINK: clang++ | |
| ASAN: true | |
| UBSAN: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| ## Specific to package | |
| _R_CHECK_USE_VALGRIND_: true | |
| UBSAN_OPTIONS: "print_stacktrace=1" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Clang | |
| uses: egor-tensin/setup-clang@v1 | |
| with: | |
| version: latest | |
| platform: x64 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check with UBSAN | |
| run: rcmdcheck::rcmdcheck(build_args = "--no-build-vignettes", args = c("--no-codoc", "--no-examples", "--no-manual", "--ignore-vignettes"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| # - name: Upload check results | |
| # if: failure() | |
| # uses: actions/upload-artifact@v3 | |
| # with: | |
| # name: ${{ runner.os }}-ubsan-rrelease-results | |
| # path: check |