Understanding the Role of Background Knowledge in Predictions; Ecotoxicological Effect Prediction. Master's thesis by Nils Petter Opsahl Skrindebakke.
conda create --name myenv --file spec-file.txt
TCE: Triple Context Embedding in Python (under development).
data: Contains the training and test data.
graph_analysis: Tools for analysis of the KG.
kg: Contains the original KGs.
kg/processed: The results from the crawls (ie. scored/filered KGs).
obj: Contains a binary file used for cache when mapping to CID.
plots: Tools for plotting graphs and printing the results.
prep: Tools for downloading and and processing KGs, test and train data.
results: Binary file containing a dictionary with the results from the runs.
src: Contains the ML-models and other related tools to run and evaluate the predictions.
src/crawl: Contains the crawling and scoring algorithms.