Reorganize CLI

[alecandido]

The EKO CLI was already initialized, but completely forgotten and unused.

I will add some basic commands to generate EKOs, useful to test further developments.

• conversion subcommand

[codecov-commenter]

Codecov Report

Merging #171 (0b5372e) into output_metadata (f01fc19) will decrease coverage by 0.50%.
The diff coverage is 83.91%.

Additional details and impacted files

@@                 Coverage Diff                 @@
##           output_metadata     #171      +/-   ##
===================================================
- Coverage            99.93%   99.43%   -0.51%     
===================================================
  Files                   96      100       +4     
  Lines                 4515     4586      +71     
===================================================
+ Hits                  4512     4560      +48     
- Misses                   3       26      +23     

Flag	Coverage Δ
isobench	53.64% <29.37%> (-0.87%)	⬇️
unittests	99.43% <83.91%> (-0.51%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/ekobox/cli/run.py	45.45% <40.00%> (-54.55%)	⬇️
src/ekobox/cli/convert.py	69.23% <69.23%> (ø)
src/ekobox/cli/runcards.py	78.94% <78.94%> (ø)
src/ekobox/cli/inspect.py	85.00% <85.00%> (ø)
src/eko/output/legacy.py	98.43% <100.00%> (ø)
src/eko/output/struct.py	99.72% <100.00%> (+<0.01%)	⬆️
src/ekobox/__init__.py	100.00% <100.00%> (ø)
src/ekobox/cards.py	100.00% <100.00%> (ø)
src/ekobox/cli/__init__.py	100.00% <100.00%> (ø)
src/ekobox/cli/base.py	100.00% <100.00%> (ø)
... and 2 more

[alecandido]

Docs can be improved, there is no coverage for the new commands.

However, not my priority at the moment, so I will stop working on this here for a while, and use for my next PR.
If someone wants to merge sooner, at least test coverage should be recovered.

[felixhekhorn]

I added two v0.8.5 example ekos we for sure want to support given that most of our "real-life" ekos are of this version - both fail:

• the yaml due to the problem given below
• the other with

$ poetry run eko convert obf24af_t8e1305.tar
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/click/core.py", line 1130, in __call__
    return self.main(*args, **kwargs)
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/click/core.py", line 1055, in main
    rv = self.invoke(ctx)
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/click/core.py", line 760, in invoke
    return __callback(*args, **kwargs)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/ekobox/cli/convert.py", line 27, in subcommand
    operator = legacy.load_tar(old)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/eko/output/legacy.py", line 278, in load_tar
    metadata = tocard(yaml.safe_load(fd))
  File "/home/felix/Physik/N3PDF/EKO/eko/src/eko/output/legacy.py", line 84, in tocard
    del card["pids"]
KeyError: 'pids'

[felixhekhorn]

Also benchmarks are broken:

$ poe lha
Poe => python benchmarks/lha_paper_bench.py
 ──────────────────────────────────────── 
  Theories: 1 OCards: 1 PDFs: 1 ext: LHA  
 ──────────────────────────────────────── 
Computing for theory=fb3f558, ocard=7f27498 and pdf=ToyLH ...
Traceback (most recent call last):
  File "/home/felix/Physik/N3PDF/EKO/eko/benchmarks/lha_paper_bench.py", line 226, in <module>
    obj.benchmark_plain(0)
  File "/home/felix/Physik/N3PDF/EKO/eko/benchmarks/lha_paper_bench.py", line 123, in benchmark_plain
    self.run_lha(self.plain_theory(pto))
  File "/home/felix/Physik/N3PDF/EKO/eko/benchmarks/lha_paper_bench.py", line 109, in run_lha
    self.run(
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/banana/benchmark/runner.py", line 416, in run
    self.run_config(session, t, o, pdf_name, use_replicas)
  File "/home/felix/.cache/pypoetry/virtualenvs/eko-KkPVjVhh-py3.10/lib/python3.10/site-packages/banana/benchmark/runner.py", line 304, in run_config
    me = self.run_me(t, o, pdf)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/ekomark/benchmark/runner.py", line 119, in run_me
    out = eko.run_dglap(theory, ocard)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/eko/__init__.py", line 29, in run_dglap
    r = runner.Runner(theory_card, operators_card)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/eko/runner.py", line 50, in __init__
    new_theory, new_operators = compatibility.update(theory_card, operators_card)
  File "/home/felix/Physik/N3PDF/EKO/eko/src/eko/compatibility.py", line 57, in update
    new_operators["rotations"]["pids"] = operators["pids"]
KeyError: 'pids'

EDIT: sorry is already a problem in the base branch ... I'll raise there