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cleaned up plankton foodweb code #67

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Jun 11, 2024
Merged

cleaned up plankton foodweb code #67

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70c41f6
cleaned up plankton foodweb code
charliestock Jun 9, 2024
bbd6d08
Update generic_COBALT.F90
yichengt900 Jun 10, 2024
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8 changes: 0 additions & 8 deletions generic_tracers/cobalt_reg_diag.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -1802,10 +1802,6 @@ subroutine cobalt_reg_diagnostics(diag_list,axes,init_time,phyto,zoo,bact,cobalt
cobalt%id_sfc_irr_aclm = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)

vardesc_temp = vardesc("sfc_irr_mem_dp","Surface Irradiance memory, diapause",'h','1','s','W m-2','f')
cobalt%id_sfc_irr_mem_dp = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)

vardesc_temp = vardesc("sfc_temp","Surface Temperature",'h','1','s','deg C','f')
cobalt%id_sfc_temp = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)
Expand Down Expand Up @@ -2347,10 +2343,6 @@ subroutine cobalt_reg_diagnostics(diag_list,axes,init_time,phyto,zoo,bact,cobalt
cobalt%id_jprod_mesozoo_200 = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)

vardesc_temp = vardesc("dp_fac","diapause factor",'h','1','s','none','f')
cobalt%id_dp_fac = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)

vardesc_temp = vardesc("daylength","daylength",'h','1','s','hours','f')
cobalt%id_daylength = register_diag_field(package_name, vardesc_temp%name, axes(1:2),&
init_time, vardesc_temp%longname,vardesc_temp%units, missing_value = missing_value1)
Expand Down
6 changes: 0 additions & 6 deletions generic_tracers/cobalt_send_diag.F90
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Expand Up @@ -720,9 +720,6 @@ subroutine cobalt_send_diagnostics(model_time,grid_tmask,Temp,rho_dzt,dzt,&
used = g_send_data(cobalt%id_sfc_irr_aclm, cobalt%f_irr_aclm_sfc(:,:,1), &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc,ie_in=iec, je_in=jec)
used = g_send_data(cobalt%id_sfc_irr_mem_dp, cobalt%f_irr_mem_dp(:,:,1), &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc,ie_in=iec, je_in=jec)
used = g_send_data(cobalt%id_mld_aclm, cobalt%mld_aclm, &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc,ie_in=iec, je_in=jec)
Expand Down Expand Up @@ -1055,9 +1052,6 @@ subroutine cobalt_send_diagnostics(model_time,grid_tmask,Temp,rho_dzt,dzt,&
used = g_send_data(cobalt%id_jprod_mesozoo_200, cobalt%jprod_mesozoo_200, &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc, ie_in=iec, je_in=jec)
used = g_send_data(cobalt%id_dp_fac, cobalt%dp_fac, &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc, ie_in=iec, je_in=jec)
used = g_send_data(cobalt%id_daylength, cobalt%daylength, &
model_time, rmask = grid_tmask(:,:,1),&
is_in=isc, js_in=jsc, ie_in=iec, je_in=jec)
Expand Down
8 changes: 0 additions & 8 deletions generic_tracers/cobalt_types.F90
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Expand Up @@ -456,11 +456,7 @@ module cobalt_types
case2_salt, & ! salt threshold for case 2 (coastal) waters
case2_opac_add, & ! added opacity for case 2 (coastal) waters
min_daylength, &
gamma_irr_mem_dp, &
gamma_mu_mem, &
irr_mem_dpthresh1, &
irr_mem_dpthresh2, &
dpause_max, &
gamma_ndet, &
gamma_nitrif, &
k_nh3_nitrif, &
Expand Down Expand Up @@ -588,7 +584,6 @@ module cobalt_types
f_irr_aclm,&
f_irr_aclm_z,&
f_irr_aclm_sfc, &
f_irr_mem_dp,&
f_cased,&
f_cadet_arag_btf,&
f_cadet_calc_btf,&
Expand Down Expand Up @@ -846,7 +841,6 @@ module cobalt_types
z_o2min, &
z_sat_arag,&
z_sat_calc,&
dp_fac,&
daylength,&
!==============================================================================================================
! JGJ 2016/08/08 CMIP6 Ocnbgc
Expand Down Expand Up @@ -1112,7 +1106,6 @@ module cobalt_types
id_sfc_chl = -1, &
id_sfc_irr = -1, &
id_sfc_irr_aclm = -1, &
id_sfc_irr_mem_dp = -1, &
id_sfc_temp = -1, &
id_btm_temp = -1, &
id_btm_temp_old = -1, &
Expand Down Expand Up @@ -1204,7 +1197,6 @@ module cobalt_types
id_jprod_cadet_calc_100 = -1, &
id_jprod_cadet_arag_100 = -1, &
id_jprod_mesozoo_200 = -1, &
id_dp_fac = -1, &
id_daylength = -1, &
id_jremin_ndet_100 = -1, &
id_f_ndet_100 = -1, &
Expand Down
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