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Update JEDI hashes (20250203) #1475

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RussTreadon-NOAA
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@RussTreadon-NOAA RussTreadon-NOAA commented Feb 2, 2025 •
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Description

Update select JEDI hashes on 20250203

Companion PRs

none

Issues

Resolves #1474

Automated CI tests to run in Global Workflow

  • atm_jjob
  • C96C48_ufs_hybatmDA
  • C96C48_hybatmaerosnowDA
  • C48mx500_3DVarAOWCDA
  • C48mx500_hybAOWCDA
  • C96C48_hybatmDA

@RussTreadon-NOAA RussTreadon-NOAA self-assigned this Feb 2, 2025
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This PR will be marked Ready for review once all GDASApp ctests have been run and pass on Hera, Hercules, and Orion and g-w CI passes on WCOSS2.

@RussTreadon-NOAA RussTreadon-NOAA added hera-GW-RT Queue for automated testing with global-workflow on Hera orion-GW-RT Queue for automated testing with global-workflow on Orion hercules-GW-RT Queue for automated testing with global-workflow on Hercules labels Feb 2, 2025
@emcbot emcbot added hercules-GW-RT-Running Automated testing with global-workflow running on Hercules orion-GW-RT-Running Automated testing with global-workflow running on Orion hera-GW-RT-Running Automated testing with global-workflow running on Hera and removed hercules-GW-RT Queue for automated testing with global-workflow on Hercules orion-GW-RT Queue for automated testing with global-workflow on Orion hera-GW-RT Queue for automated testing with global-workflow on Hera labels Feb 2, 2025
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emcbot commented Feb 2, 2025

Automated GW-GDASApp Testing Results:
Machine: hercules

Start: Sun Feb  2 14:48:35 CST 2025 on hercules-login-1.hpc.msstate.edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Sun Feb  2 15:24:43 CST 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp
Tests:                                 *SUCCESS*
Tests: Completed at Sun Feb  2 16:24:09 CST 2025
Tests: 100% tests passed, 0 tests failed out of 135

@emcbot emcbot added hercules-GW-RT-Passed Automated testing with global-workflow successful on Hercules and removed hercules-GW-RT-Running Automated testing with global-workflow running on Hercules labels Feb 2, 2025
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emcbot commented Feb 2, 2025

Automated GW-GDASApp Testing Results:
Machine: hera

Start: Sun Feb  2 20:56:24 UTC 2025 on hfe09
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Sun Feb  2 21:42:53 UTC 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp
Tests:                                 *SUCCESS*
Tests: Completed at Sun Feb  2 22:43:09 UTC 2025
Tests: 100% tests passed, 0 tests failed out of 135

@emcbot emcbot added hera-GW-RT-Passed Automated testing with global-workflow successful on Hera and removed hera-GW-RT-Running Automated testing with global-workflow running on Hera labels Feb 2, 2025
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emcbot commented Feb 2, 2025

Automated GW-GDASApp Testing Results:
Machine: orion

Start: Sun Feb  2 02:51:15 PM CST 2025 on orion-login-1.hpc.msstate.edu
---------------------------------------------------
Build:                                 *SUCCESS*
Build: Completed at Sun Feb  2 03:55:49 PM CST 2025
---------------------------------------------------
Tests: ctest -j12 -R gdasapp
Tests:                                 *SUCCESS*
Tests: Completed at Sun Feb  2 05:38:19 PM CST 2025
Tests: 100% tests passed, 0 tests failed out of 135

@emcbot emcbot added orion-GW-RT-Passed Automated testing with global-workflow successful on Orion and removed orion-GW-RT-Running Automated testing with global-workflow running on Orion labels Feb 2, 2025
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WCOSS2 g-w CI

Clone g-w develop at 380946c on Cactus. Update sorc/gdas.cd to feature/stable-nightly at e6eafb0`.

All g-w components successfully build except GDASApp. The GDASApp build fails with

[100%] Linking CXX executable ../../bin/gdas_soca_error_covariance_toolbox.x
cd /lfs/h2/emc/da/noscrub/russ.treadon/git/global-workflow/stable-nightly/sorc/gdas.cd/build/gdas/mains && /apps/ops/test/spack-stack-1.6.0-nco/envs/nco-intel-19.1.3.304/install/intel/19.1.3.304/cmake-3.23.1-chpcsen/bin/cmake -E remove /lfs/h2/emc/da/noscrub/russ.treadon/git/global-workflow/stable-nightly/sorc/gdas.cd/build/bin/gdas_soca_error_covariance_toolbox.x
cd /lfs/h2/emc/da/noscrub/russ.treadon/git/global-workflow/stable-nightly/sorc/gdas.cd/build/gdas/mains && /apps/ops/test/\
spack-stack-1.6.0-nco/envs/nco-intel-19.1.3.304/install/intel/19.1.3.304/cmake-3.23.1-chpcsen/bin/cmake -E cmake_link_script CMakeFiles/gdas_soca_error_covariance_toolbox.x.dir/link.txt --verbose=NO
/usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: ../../lib/libsaber.so: undefined reference to `atlas::grid::detail::partitioner::TransPartitioner::TransPartitioner()'
make[2]: *** [gdas/mains/CMakeFiles/gdas_soca_error_covariance_toolbox.x.dir/build.make:174: bin/gdas_soca_error_covariance_toolbox.x] Error 1
make[2]: Leaving directory '/lfs/h2/emc/da/noscrub/russ.treadon/git/global-workflow/stable-nightly/sorc/gdas.cd/build'
make[1]: *** [CMakeFiles/Makefile2:28951: gdas/mains/CMakeFiles/gdas_soca_error_covariance_toolbox.x.dir/all] Error 2
make[1]: Leaving directory '/lfs/h2/emc/da/noscrub/russ.treadon/git/global-workflow/stable-nightly/sorc/gdas.cd/build'
make: *** [Makefile:166: all] Error 2

Notice that Hera, Hercules, and Orion use more recent versions of atlas

./hera.intel.lua:load("atlas/0.35.1")
./orion.intel.lua:load("atlas/0.35.1")
./wcoss2.intel.lua:load("atlas/0.35.0")
./hercules.gnu.lua:load("atlas/0.36.0")
./hercules.intel.lua:load("atlas/0.36.0")

Might a more recent version of atlas resolve the
undefined reference to atlas::grid::detail::partitioner::TransPartitioner::TransPartitioner()'
message in libsaber.so?

Manually load GDASApp wcoss2.intel modulefile on Cactus. module spider atlas returns

---------------------------------------------------------------------------------------------------------------------------------
  atlas:
---------------------------------------------------------------------------------------------------------------------------------
     Versions:
        atlas/0.33.0
        atlas/0.35.0

Unfortunately, atlas/0.35.0 is the most recent version of atlas available in the current installation of spack-stack/1.6.0 on WCOSS2.

Note that saber PR #1001 contains references to TransPartitioner.h in WriteFields.cc.

As a test back up working copy of sorc/saber to hash d51284c6. This is the commit prior to saber PR #1001. feature/stable-nightly successfully builds on Cactus using this saber hash.

We need to reach out to the library time to request installation of a newer version of atlas on WCOSS2. This PR can not move forward until we can build and run feature/stable-nightly on WCOSS2.

Attention: @DavidNew-NOAA , @danholdaway , @CoryMartin-NOAA , @guillaumevernieres

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WCOSS2 g-w CI
As a test revert sorc/saber back to d51284c6, build GDASApp, and run g-w CI on Cactus. All configurations successfully run to completion.

/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_ATM_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Feb 03 2025 10:05:18    Feb 03 2025 11:15:25
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_3DVarAOWCDA_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Feb 03 2025 10:05:22    Feb 03 2025 10:20:23
202103250000      Active    Feb 03 2025 10:05:22             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_hybAOWCDA_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Feb 03 2025 10:05:24    Feb 03 2025 10:20:30
202103250000        Done    Feb 03 2025 10:05:24    Feb 03 2025 11:25:21
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SWA_gefs_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Feb 03 2025 10:05:39    Feb 03 2025 12:01:05
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SW_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Feb 03 2025 10:05:26    Feb 03 2025 11:30:46
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_atm3DVar_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Feb 03 2025 10:05:29    Feb 03 2025 10:20:40
202112210000        Done    Feb 03 2025 10:05:29    Feb 03 2025 12:30:37
202112210600        Done    Feb 03 2025 10:05:29    Feb 03 2025 12:15:35
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmaerosnowDA_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201200        Done    Feb 03 2025 10:05:31    Feb 03 2025 10:25:41
202112201800        Done    Feb 03 2025 10:05:31    Feb 03 2025 12:30:41
202112210000        Done    Feb 03 2025 10:05:31    Feb 03 2025 12:20:45
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmDA_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Feb 03 2025 10:05:33    Feb 03 2025 10:20:49
202112210000        Done    Feb 03 2025 10:05:33    Feb 03 2025 12:05:39
202112210600        Done    Feb 03 2025 10:05:33    Feb 03 2025 12:10:44
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_ufs_hybatmDA_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202402231800        Done    Feb 03 2025 10:05:36    Feb 03 2025 10:20:53
202402240000        Done    Feb 03 2025 10:05:36    Feb 03 2025 12:53:23
202402240600        Done    Feb 03 2025 10:05:36    Feb 03 2025 12:52:37
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_S2SWA_gefs_replay_ics_stable-nightly
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202011010000        Done    Feb 03 2025 10:05:43    Feb 03 2025 10:56:14

@RussTreadon-NOAA RussTreadon-NOAA added the DO NOT MERGE PR is not ready to be merged yet label Feb 3, 2025
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While g-w based GDASAPpp ctests pass on Hera, Hercules, and Orion, we can not build feature/stable-nightly at e6eafb0 on WCOSS2. Starting with saber @ b85ece5 we need at least atlas/0.35.1. Currently the WCOSS2 spack-stack installation only has atlas versions up to 0.35.0.

Mark this PR DO NO MERGE until WCOSS2 spack stack is updated.

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DO NOT MERGE PR is not ready to be merged yet hera-GW-RT-Passed Automated testing with global-workflow successful on Hera hercules-GW-RT-Passed Automated testing with global-workflow successful on Hercules orion-GW-RT-Passed Automated testing with global-workflow successful on Orion
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Update JEDI hashes (20250203)
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@RussTreadon-NOAA @emcbot