Add option to use netcdf global_berror files #949
Workflow file for this run
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name: Intel Linux Build | |
on: [push, pull_request, workflow_dispatch] | |
# Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh | |
# without having to do it in manually every step | |
defaults: | |
run: | |
shell: bash -leo pipefail {0} | |
# Set I_MPI_CC/F90 so Intel MPI wrapper uses icc/ifort instead of gcc/gfortran | |
env: | |
cache_key: intel | |
CC: icc | |
FC: ifort | |
CXX: icpc | |
I_MPI_CC: icc | |
I_MPI_F90: ifort | |
# The jobs are split into: | |
# 1. a dependency build step (setup), and | |
# 2. a GSI build step (gsi) | |
# The setup is run once and the environment is cached, | |
# so each subsequent build of GSI can reuse the cached dependencies to save time (and compute). | |
jobs: | |
setup: | |
runs-on: ubuntu-latest | |
steps: | |
# Free up disk space | |
- name: free-disk-spack | |
run: | | |
df -h | |
sudo swapoff -a | |
sudo rm -f /swapfile | |
sudo apt clean | |
docker rmi $(docker image ls -aq) | |
# Checkout the GSI to get the ci/spack.yaml file | |
- name: checkout | |
if: steps.cache-env.outputs.cache-hit != 'true' | |
uses: actions/checkout@v4 | |
with: | |
path: gsi | |
# Cache spack, compiler and dependencies | |
- name: cache-env | |
id: cache-env | |
uses: actions/cache@v3 | |
with: | |
path: | | |
spack | |
~/.spack | |
/opt/intel | |
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('gsi/ci/spack.yaml') }} | |
- name: install-intel-compilers | |
run: | | |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
sudo apt-get update | |
sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran-2023.2.1 intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.2.1 | |
sudo apt-get clean | |
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
# Install dependencies using Spack | |
- name: install-dependencies-with-spack | |
if: steps.cache-env.outputs.cache-hit != 'true' | |
run: | | |
sudo mv /usr/local/ /usr_local_mv | |
sudo apt-get install cmake | |
git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | |
source spack/share/spack/setup-env.sh | |
spack env create gsi-env gsi/ci/spack.yaml | |
spack env activate gsi-env | |
spack compiler find | |
sudo apt install cmake | |
spack external find | |
spack add intel-oneapi-mpi | |
spack concretize | |
spack install -v --fail-fast --dirty | |
spack clean -a | |
gsi: | |
needs: setup | |
runs-on: ubuntu-latest | |
steps: | |
- name: install-intel | |
run: | | |
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile | |
- name: checkout | |
uses: actions/checkout@v4 | |
with: | |
path: gsi | |
- name: cache-env | |
id: cache-env | |
uses: actions/cache@v3 | |
with: | |
path: | | |
spack | |
~/.spack | |
/opt/intel | |
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('gsi/ci/spack.yaml') }} | |
- name: build | |
run: | | |
source spack/share/spack/setup-env.sh | |
spack env activate gsi-env | |
cd gsi | |
mkdir -p build && cd build | |
cmake -DCMAKE_INSTALL_PREFIX=../install -DGSI_MODE=Regional -DENKF_MODE=GFS -DBUILD_REG_TESTING=OFF .. | |
make -j2 VERBOSE=1 | |
make install | |
env: | |
CC: mpiicc | |
FC: mpiifort |