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Orog fix file reorg and fix directory variable standardization (#2181)
This PR makes updates to use the newly reorganized `orog/20231027` fix file version and standardizes the fix file directory variables. Changes: 1. Update UFS_UTILS hash to ce385ce 2. Update fix file version file to use new orog timestamp: `orog_ver=20231027` 3. Add ".mx$(OCNRES)" to `oro_data` filenames in scripts 4. Remove ".mx$(ocn_res)_frac" from the directory names for atmosphere resolutions under the `/orog` folder 5. Adds fix file directory variables to `config.base`, many of which are pulled up out of lower scripts; introduce `FIXcpl` 6. Renamed/replaced the following fix file directory variables: - `FV3JEDI_FIX` --> `FIXgdas` - `FIXfv3`, `FIX_orog` and `OROFIX` --> `FIXorog` - `FIX_ugwd` and `OROFIX_ugwd` --> `FIXugwd` - `FIX_am`, `FIXgsm`, `FIXSYND` --> `FIXam` - `FIX_lut` --> `FIXlut` - `FIX_aer` --> `FIXaer` - `FIX_SFC` --> `FIXsfc` - `FIX_DIR` --> `FIXgfs` - `RTMFIX` and `FIXCRTM` --> `CRTM_FIX` (is `CRTM_FIX` in crtm module, so not using `FIXcrtm`) 7. Correct the defaults for `FIXwave` in wave JJOB scripts 8. Update variable names in `*fixed_files.yaml` files, as well as update naming convention for `oro_data` files Resolves #1984 Resolves #1981 Resolves #2175
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,11 @@ | ||
| mkdir: | ||
| - !ENV ${DATA}/fv3jedi | ||
| copy: | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/akbk$(npz).nc4 | ||
| - - !ENV ${FIXgdas}/fv3jedi/fv3files/akbk$(npz).nc4 | ||
| - !ENV ${DATA}/fv3jedi/akbk.nc4 | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/fmsmpp.nml | ||
| - - !ENV ${FIXgdas}/fv3jedi/fv3files/fmsmpp.nml | ||
| - !ENV ${DATA}/fv3jedi/fmsmpp.nml | ||
| - - !ENV ${FV3JEDI_FIX}/fv3jedi/fv3files/field_table_gfdl | ||
| - - !ENV ${FIXgdas}/fv3jedi/fv3files/field_table_gfdl | ||
| - !ENV ${DATA}/fv3jedi/field_table | ||
| - - !ENV $(HOMEgfs)/sorc/gdas.cd/parm/io/fv3jedi_fieldmetadata_restart.yaml | ||
| - !ENV ${DATA}/fv3jedi/fv3jedi_fieldmetadata_restart.yaml |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,85 +1,85 @@ | ||
| copy: | ||
| # Atmosphere mosaic file linked as the grid_spec file (atm only) | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_mosaic.nc, $(DATA)/INPUT/grid_spec.nc] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_mosaic.nc, $(DATA)/INPUT/grid_spec.nc] | ||
|
|
||
| # Atmosphere grid tile files | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile1.nc, $(DATA)/INPUT/] | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile2.nc, $(DATA)/INPUT/] | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile3.nc, $(DATA)/INPUT/] | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile4.nc, $(DATA)/INPUT/] | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile5.nc, $(DATA)/INPUT/] | ||
| - [$(FIX_orog)/$(atm_res)/$(atm_res)_grid.tile6.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile1.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile2.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile3.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile4.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile5.nc, $(DATA)/INPUT/] | ||
| - [$(FIXorog)/$(CASE)/$(CASE)_grid.tile6.nc, $(DATA)/INPUT/] | ||
|
|
||
| # oro_data_ls and oro_data_ss files from FIX_ugwd | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile1.nc, $(DATA)/INPUT/oro_data_ls.tile1.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile2.nc, $(DATA)/INPUT/oro_data_ls.tile2.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile3.nc, $(DATA)/INPUT/oro_data_ls.tile3.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile4.nc, $(DATA)/INPUT/oro_data_ls.tile4.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile5.nc, $(DATA)/INPUT/oro_data_ls.tile5.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ls.tile6.nc, $(DATA)/INPUT/oro_data_ls.tile6.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile1.nc, $(DATA)/INPUT/oro_data_ss.tile1.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile2.nc, $(DATA)/INPUT/oro_data_ss.tile2.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile3.nc, $(DATA)/INPUT/oro_data_ss.tile3.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile4.nc, $(DATA)/INPUT/oro_data_ss.tile4.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile5.nc, $(DATA)/INPUT/oro_data_ss.tile5.nc] | ||
| - [$(FIX_ugwd)/$(atm_res)/$(atm_res)_oro_data_ss.tile6.nc, $(DATA)/INPUT/oro_data_ss.tile6.nc] | ||
| # oro_data_ls and oro_data_ss files from FIXugwd | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile1.nc, $(DATA)/INPUT/oro_data_ls.tile1.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile2.nc, $(DATA)/INPUT/oro_data_ls.tile2.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile3.nc, $(DATA)/INPUT/oro_data_ls.tile3.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile4.nc, $(DATA)/INPUT/oro_data_ls.tile4.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile5.nc, $(DATA)/INPUT/oro_data_ls.tile5.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ls.tile6.nc, $(DATA)/INPUT/oro_data_ls.tile6.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile1.nc, $(DATA)/INPUT/oro_data_ss.tile1.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile2.nc, $(DATA)/INPUT/oro_data_ss.tile2.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile3.nc, $(DATA)/INPUT/oro_data_ss.tile3.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile4.nc, $(DATA)/INPUT/oro_data_ss.tile4.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile5.nc, $(DATA)/INPUT/oro_data_ss.tile5.nc] | ||
| - [$(FIXugwd)/$(CASE)/$(CASE)_oro_data_ss.tile6.nc, $(DATA)/INPUT/oro_data_ss.tile6.nc] | ||
|
|
||
| # GWD?? | ||
| - [$(FIX_ugwd)/ugwp_limb_tau.nc, $(DATA)/ugwp_limb_tau.nc] | ||
| - [$(FIXugwd)/ugwp_limb_tau.nc, $(DATA)/ugwp_limb_tau.nc] | ||
|
|
||
| # CO2 climatology | ||
| - [$(FIX_am)/co2monthlycyc.txt, $(DATA)/co2monthlycyc.txt] | ||
| - [$(FIX_am)/global_co2historicaldata_glob.txt, $(DATA)/co2historicaldata_glob.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2009.txt, $(DATA)/co2historicaldata_2009.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2010.txt, $(DATA)/co2historicaldata_2010.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2011.txt, $(DATA)/co2historicaldata_2011.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2012.txt, $(DATA)/co2historicaldata_2012.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2013.txt, $(DATA)/co2historicaldata_2013.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2014.txt, $(DATA)/co2historicaldata_2014.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2015.txt, $(DATA)/co2historicaldata_2015.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2016.txt, $(DATA)/co2historicaldata_2016.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2017.txt, $(DATA)/co2historicaldata_2017.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2018.txt, $(DATA)/co2historicaldata_2018.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2019.txt, $(DATA)/co2historicaldata_2019.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2020.txt, $(DATA)/co2historicaldata_2020.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2021.txt, $(DATA)/co2historicaldata_2021.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2022.txt, $(DATA)/co2historicaldata_2022.txt] | ||
| - [$(FIX_am)/fix_co2_proj/global_co2historicaldata_2023.txt, $(DATA)/co2historicaldata_2023.txt] | ||
| - [$(FIXam)/co2monthlycyc.txt, $(DATA)/co2monthlycyc.txt] | ||
| - [$(FIXam)/global_co2historicaldata_glob.txt, $(DATA)/co2historicaldata_glob.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2009.txt, $(DATA)/co2historicaldata_2009.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2010.txt, $(DATA)/co2historicaldata_2010.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2011.txt, $(DATA)/co2historicaldata_2011.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2012.txt, $(DATA)/co2historicaldata_2012.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2013.txt, $(DATA)/co2historicaldata_2013.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2014.txt, $(DATA)/co2historicaldata_2014.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2015.txt, $(DATA)/co2historicaldata_2015.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2016.txt, $(DATA)/co2historicaldata_2016.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2017.txt, $(DATA)/co2historicaldata_2017.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2018.txt, $(DATA)/co2historicaldata_2018.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2019.txt, $(DATA)/co2historicaldata_2019.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2020.txt, $(DATA)/co2historicaldata_2020.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2021.txt, $(DATA)/co2historicaldata_2021.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2022.txt, $(DATA)/co2historicaldata_2022.txt] | ||
| - [$(FIXam)/fix_co2_proj/global_co2historicaldata_2023.txt, $(DATA)/co2historicaldata_2023.txt] | ||
|
|
||
| # FIX_am files | ||
| - [$(FIX_am)/global_climaeropac_global.txt, $(DATA)/aerosol.dat] | ||
| - [$(FIX_am)/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77, $(DATA)/global_o3prdlos.f77] | ||
| - [$(FIX_am)/global_h2o_pltc.f77, $(DATA)/global_h2oprdlos.f77] | ||
| - [$(FIX_am)/global_glacier.2x2.grb, $(DATA)/global_glacier.2x2.grb] | ||
| - [$(FIX_am)/global_maxice.2x2.grb, $(DATA)/global_maxice.2x2.grb] | ||
| - [$(FIX_am)/global_snoclim.1.875.grb, $(DATA)/global_snoclim.1.875.grb] | ||
| - [$(FIX_am)/global_slmask.t1534.3072.1536.grb, $(DATA)/global_slmask.t1534.3072.1536.grb] | ||
| - [$(FIX_am)/global_soilmgldas.statsgo.t1534.3072.1536.grb, $(DATA)/global_soilmgldas.statsgo.t1534.3072.1536.grb] | ||
| - [$(FIX_am)/global_solarconstant_noaa_an.txt, $(DATA)/solarconstant_noaa_an.txt] | ||
| - [$(FIX_am)/global_sfc_emissivity_idx.txt, $(DATA)/sfc_emissivity_idx.txt] | ||
| - [$(FIX_am)/RTGSST.1982.2012.monthly.clim.grb, $(DATA)/RTGSST.1982.2012.monthly.clim.grb] | ||
| - [$(FIX_am)/IMS-NIC.blended.ice.monthly.clim.grb, $(DATA)/IMS-NIC.blended.ice.monthly.clim.grb] | ||
| # FIXam files | ||
| - [$(FIXam)/global_climaeropac_global.txt, $(DATA)/aerosol.dat] | ||
| - [$(FIXam)/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77, $(DATA)/global_o3prdlos.f77] | ||
| - [$(FIXam)/global_h2o_pltc.f77, $(DATA)/global_h2oprdlos.f77] | ||
| - [$(FIXam)/global_glacier.2x2.grb, $(DATA)/global_glacier.2x2.grb] | ||
| - [$(FIXam)/global_maxice.2x2.grb, $(DATA)/global_maxice.2x2.grb] | ||
| - [$(FIXam)/global_snoclim.1.875.grb, $(DATA)/global_snoclim.1.875.grb] | ||
| - [$(FIXam)/global_slmask.t1534.3072.1536.grb, $(DATA)/global_slmask.t1534.3072.1536.grb] | ||
| - [$(FIXam)/global_soilmgldas.statsgo.t1534.3072.1536.grb, $(DATA)/global_soilmgldas.statsgo.t1534.3072.1536.grb] | ||
| - [$(FIXam)/global_solarconstant_noaa_an.txt, $(DATA)/solarconstant_noaa_an.txt] | ||
| - [$(FIXam)/global_sfc_emissivity_idx.txt, $(DATA)/sfc_emissivity_idx.txt] | ||
| - [$(FIXam)/RTGSST.1982.2012.monthly.clim.grb, $(DATA)/RTGSST.1982.2012.monthly.clim.grb] | ||
| - [$(FIXam)/IMS-NIC.blended.ice.monthly.clim.grb, $(DATA)/IMS-NIC.blended.ice.monthly.clim.grb] | ||
|
|
||
| # MERRA2 Aerosol Climatology | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m01.nc, $(DATA)/aeroclim.m01.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m02.nc, $(DATA)/aeroclim.m02.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m03.nc, $(DATA)/aeroclim.m03.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m04.nc, $(DATA)/aeroclim.m04.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m05.nc, $(DATA)/aeroclim.m05.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m06.nc, $(DATA)/aeroclim.m06.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m07.nc, $(DATA)/aeroclim.m07.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m08.nc, $(DATA)/aeroclim.m08.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m09.nc, $(DATA)/aeroclim.m09.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m10.nc, $(DATA)/aeroclim.m10.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m11.nc, $(DATA)/aeroclim.m11.nc] | ||
| - [$(FIX_aer)/merra2.aerclim.2003-2014.m12.nc, $(DATA)/aeroclim.m12.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m01.nc, $(DATA)/aeroclim.m01.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m02.nc, $(DATA)/aeroclim.m02.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m03.nc, $(DATA)/aeroclim.m03.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m04.nc, $(DATA)/aeroclim.m04.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m05.nc, $(DATA)/aeroclim.m05.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m06.nc, $(DATA)/aeroclim.m06.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m07.nc, $(DATA)/aeroclim.m07.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m08.nc, $(DATA)/aeroclim.m08.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m09.nc, $(DATA)/aeroclim.m09.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m10.nc, $(DATA)/aeroclim.m10.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m11.nc, $(DATA)/aeroclim.m11.nc] | ||
| - [$(FIXaer)/merra2.aerclim.2003-2014.m12.nc, $(DATA)/aeroclim.m12.nc] | ||
|
|
||
| # Optical depth | ||
| - [$(FIX_lut)/optics_BC.v1_3.dat, $(DATA)/optics_BC.dat] | ||
| - [$(FIX_lut)/optics_DU.v15_3.dat, $(DATA)/optics_DU.dat] | ||
| - [$(FIX_lut)/optics_OC.v1_3.dat, $(DATA)/optics_OC.dat] | ||
| - [$(FIX_lut)/optics_SS.v3_3.dat, $(DATA)/optics_SS.dat] | ||
| - [$(FIX_lut)/optics_SU.v1_3.dat, $(DATA)/optics_SU.dat] | ||
| - [$(FIXlut)/optics_BC.v1_3.dat, $(DATA)/optics_BC.dat] | ||
| - [$(FIXlut)/optics_DU.v15_3.dat, $(DATA)/optics_DU.dat] | ||
| - [$(FIXlut)/optics_OC.v1_3.dat, $(DATA)/optics_OC.dat] | ||
| - [$(FIXlut)/optics_SS.v3_3.dat, $(DATA)/optics_SS.dat] | ||
| - [$(FIXlut)/optics_SU.v1_3.dat, $(DATA)/optics_SU.dat] | ||
|
|
||
| # fd_ufs.yaml file | ||
| - [$(HOMEgfs)/sorc/ufs_model.fd/tests/parm/fd_ufs.yaml, $(DATA)/] |
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