Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

RussTreadon-NOAA · 2020-06-15T20:58:57Z

GFS v16 workflow ecen jobs require chgres'd gdas atmospheric forecasts from the previous cycle. This chgres operation is currently performed in current cycle gdasanalcalc. The chgres executable takes about 8 minutes to run on WCOSS_D. This chgres operation could be performed in the previous cycle, thereby allowing ecen to start 8 minutes earlier in the current cycle.

Cory made the necessary changes in global-workflow branch feature/chgresfcst. These changes require changes in GFS v16 DA. Cory made the DA changes in feature/gdaschgres, a branch in his fork of the NOAA-EMC/GSI repo.

This issue is opened to document these changes, their testing, and merger into global-workflow branch feature/gfsv16b.

…bles to env

RussTreadon-NOAA · 2020-06-18T20:11:36Z

Work complete. feature/chgresfcst merged into feature/gfsv16b at ff8cd28.

This issue is closed.

* feature/gfsv16b: Update config.resources Issue #85: update DA checkout to point at release/gfsda.v16.0.0 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst add checkout.sh to test on Dell Commit changes from debugging addition of chgresfcst on hera First draft to add chgresfcst to rocoto workflow

Corrected setting of nwat for Thompson MP in config.fcst Squashed commit of the following: commit 28b1faf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a930 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c36 Merge: 99277ae 1e56edd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56edd Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ec Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885 Merge: 968b986 bf5a5c4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c4 Merge: b27a01d 968b986 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b986 Merge: 9b36cfd dc512dd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd Merge: a7b25a3 987c32a Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32a Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee67 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba89548 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e25 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29 Merge: 49abb90 e87b5a1 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb90 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a1 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d7131 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd821 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a133 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2 commit 4291349 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue May 12 03:05:17 2020 +0000 modified: checkout.sh to check out gldas_gfsv16_release.v1.2.0. commit 0c0614c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 8 18:29:07 2020 +0000 Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources commit a601acd Author: emc.glopara <emc.glopara@noaa.gov> Date: Fri May 8 04:17:27 2020 +0000 updated config.vrfy to point to the fit2obs version that supports reading netcdf history files export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun" export PREPQFITSH="$fitdir/subfits_hera_slurm" commit ad86a55 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed May 6 15:28:49 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1 commit 20572b5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 1 19:08:23 2020 +0000 Issue #1: update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates commit 20baab7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 29 18:49:05 2020 +0000 modified: checkout.sh to check out model tag GFS.v16.0.3 In Sfc_diff.f, a bug was introduced when the surface layer scheme was updated last time to reduce 2-m temperature cold biases. The bug only has impact over sea-ice points, where momentum and thermal roughness are nevertheless very small. commit af63464 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 28 18:18:44 2020 +0000 modified: qctropcy.f by Qingfu Liu A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr) save the first and last storm ID used. If the FORTRAN code finds that the storm ID has been used in the current hurricane season, the code will change the storm ID by adding 1 to the original storm ID. The fix is to skip the change of the storm ID. See also #63

- updated INFO file Squashed commit of the following: commit be717ce Merge: df8dc52 99277ae Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 23 16:20:51 2020 +0000 Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: Update README.md modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df8dc52 Merge: ff46607 df89cc8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 22 14:41:17 2020 +0000 Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: Update config.resources Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst add checkout.sh to test on Dell Commit changes from debugging addition of chgresfcst on hera First draft to add chgresfcst to rocoto workflow commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 commit ff46607 Merge: ed6b279 1dd83b8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Jun 17 17:23:44 2020 +0000 Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion * feature/gfsv16b: modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA Issue #1 - update Externals.cfg to match updates to checkout.sh Update exwave_post_sbs.sh Adapting wavepostsbs for running on Hera commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow

* First draft to add chgresfcst to rocoto workflow * Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base * Commit changes from debugging addition of chgresfcst on hera * add checkout.sh to test on Dell * Adapting wavepostsbs for running on Hera * Issue #1 - Hotfix to update anaconda module contrib path on Hera * modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. * Update exwave_post_sbs.sh Removing obsolete nm variable entries * Issue #1 - update Externals.cfg to match updates to checkout.sh * Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst * modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA * Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag * update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. * modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel * Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env * Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 * Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. * Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh * modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 * Merge updates from EMC. * Update README.md Remove use/mention of manage_externals until checkout.sh is retired. * fix for exiting properly with error for wave prep/init scripts * Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts * modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} * corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt * modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" * modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. * further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well * Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 * Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" * modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (NOAA-EMC#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov> Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov> Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov> Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov> Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov> Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>

* First draft to add chgresfcst to rocoto workflow * Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base * Commit changes from debugging addition of chgresfcst on hera * add checkout.sh to test on Dell * Adapting wavepostsbs for running on Hera * Issue #1 - Hotfix to update anaconda module contrib path on Hera * modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. * Update exwave_post_sbs.sh Removing obsolete nm variable entries * Issue #1 - update Externals.cfg to match updates to checkout.sh * Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst * modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA * Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag * update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. * modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel * Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env * Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 * Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. * Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh * modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 * Update README.md Remove use/mention of manage_externals until checkout.sh is retired. * fix for exiting properly with error for wave prep/init scripts * Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts * modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} * corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt * modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" * Issue NOAA-EMC#94 - generalization updates to link script - change 'nco' mode to 'prod' mode - change 'emc' mode to 'dev' mode - update machine values to match target names * Issue NOAA-EMC#94 - commit initial version of new installation script * modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. * further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well * Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 * Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" * Issue NOAA-EMC#94 - initial add of COMPONENTatmos variable to scripts * modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (NOAA-EMC#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) * Issue NOAA-EMC#94 - convert variables into hard-coded values per feedback * Issue NOAA-EMC#94 - fix dependencies with in the path * Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh * modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. * modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos * Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 4977271. * GitHub Issue#94 update gempak's ush scripts * Issue NOAA-EMC#94 - added and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention * Issue NOAA-EMC#94 - updates to wave scripts based on NCO feedback * Issue NOAA-EMC#94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead * Issue NOAA-EMC#94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting * Issue NOAA-EMC#94 - fix dirpath in ush/hpssarch_gen.sh * Issue NOAA-EMC#94 - component checkout updates to use forks and new UPP tag * Issue #1: add enkf member sfcf006.nc to enkf tarballs * Issue NOAA-EMC#94 - new GLDAS tag with atmos directory * Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env * Reverting link_fv3gfs.sh, will commit in different changeset * Issue NOAA-EMC#94 - updating GLDAS and EMC_post tags in Externals.cfg * Issue NOAA-EMC#94 - add to gempak scripts and cleanup based on PR feedback * Issue NOAA-EMC#94 - removing new install script, will introduce via another branch, needs more testing * Issue NOAA-EMC#94 - retire BASE_SVN * Issue NOAA-EMC#94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos * Issue NOAA-EMC#94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available * Issue NOAA-EMC#94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team * Issue NOAA-EMC#94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh * Issue NOAA-EMC#94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post * Issue NOAA-EMC#94 - updates for FSU tracker * Issue NOAA-EMC#94 - fix AWIPS file dependency * Issue NOAA-EMC#94 - update WCOSS-Dell module versions to prod_util and EnvVars * Issue NOAA-EMC#94 - update CFP module version on WCOSS-Dell * Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal * Issue NOAA-EMC#94 - pull in two fixes for wave job setup in free-forecast mode * Issue NOAA-EMC#94 - fix to messed up shebang in setup_expt_fcstonly.py Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov> Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov> Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov> Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov> Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov> Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov>

Squashed commit of the following: commit 9b923ac Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:37:51 2020 +0000 Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal commit d175130 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jul 23 11:20:15 2020 +0000 Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env commit 145f810 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jul 20 21:09:40 2020 +0000 Issue #1: add enkf member sfcf006.nc to enkf tarballs commit d7425d0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:50:54 2020 +0000 Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 4977271. commit 4977271 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:45:32 2020 +0000 modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos commit 8b0f57f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 13 23:43:55 2020 +0000 modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. commit 37e0f57 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 13 17:26:52 2020 +0000 Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh commit d57fc02 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 22:59:35 2020 +0000 modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (NOAA-EMC#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) commit ae7dbdb Merge: 6e73de0 58fb795 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 11:30:07 2020 -0400 Merge pull request NOAA-EMC#96 from NOAA-EMC/feature/gfsv16b_restart modified: exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability commit 58fb795 Merge: 4a1cf2b 6e73de0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 7 15:58:25 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 6e73de0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 15:03:09 2020 +0000 Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" commit 22ad770 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 13:47:26 2020 +0000 Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 commit 4a1cf2b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 6 23:59:03 2020 +0000 further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well commit 5fe1a21 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jul 4 19:43:29 2020 +0000 modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. commit 28b1faf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a930 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c36 Merge: 99277ae 1e56edd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request NOAA-EMC#93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56edd Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ec Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885 Merge: 968b986 bf5a5c4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request NOAA-EMC#83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c4 Merge: b27a01d 968b986 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b986 Merge: 9b36cfd dc512dd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd Merge: a7b25a3 987c32a Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request NOAA-EMC#82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32a Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee67 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba89548 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e25 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29 Merge: 49abb90 e87b5a1 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb90 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a1 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d7131 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd821 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a133 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2

Squashed commit of the following: commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 15 10:25:37 2020 +0000 Issue #1: add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix) commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3 Merge: c33869da 586fe6ce Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Sep 14 10:34:39 2020 -0400 Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs Bugfix for rtofs commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Sep 14 14:29:01 2020 +0000 adding the line to go back a day for RTOFS for the if not NCO section because RTOFS will not be available until 06 cycle commit c33869dab2704396ea6e569dcd202a2b9866827a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Sep 14 02:34:08 2020 +0000 deleted relocate_mv_nvortex.fd since storm relocation is no longer needed. modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex commit 4320bf9fd55757df79b63ed15c2041b1acd0e604 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Sat Sep 12 00:05:38 2020 +0000 Issue #1: correct DA typos in sorc/link_fv3gfs.sh commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc Merge: 46c2404e ad1a9d90 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 15:06:36 2020 -0400 Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave Splitting post jobs for waves commit ad1a9d9044e89b75ec82bb201e35005552d3d177 Merge: 986f8f0b fd687727 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Fri Sep 11 14:01:35 2020 -0400 Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost Sync with feature/gfsv16b and small updates to split wave post changes commit fd687727b2df80f81fabc41b94f808b74e68783c Merge: 986f8f0b fc60e895 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:52:30 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 17:45:03 2020 +0000 Increase walltime for new wavepost jobs commit e0dd1097de2c335400a546137569886a838c46ba Merge: 0844b004 46c2404e Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 14:20:15 2020 +0000 Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f Merge: c5546570 9d9b79c9 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Sep 11 10:15:49 2020 -0400 Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit c554657023d82ac934b481593e55406c45157932 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Sep 11 13:59:51 2020 +0000 Issue #1: update name of DA jobs and scripts in accordance with WCOSS Implementation Standards commit 9d9b79c911add71065b0999821772d026609ad62 Merge: cb78f7b8 d3946f90 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:48:19 2020 +0000 Issue #94 solving a conflict commit cb78f7b839a7b5fd5082f39592e3b450ce059e82 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Fri Sep 11 13:21:41 2020 +0000 Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 8 14:46:39 2020 +0000 Issue #1: clean up DA sections of link_fv3gfs.sh commit 986f8f0b9858f61d32d337a67efa966a7948aa94 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 0844b0043c937925c5ad76b4fad03308483d49b3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Fri Sep 4 15:42:25 2020 +0000 fix from Bhavani for having first wave grib file be set as a forecast instead of analysis commit 64409b1e9e976b75afd8a3548e7023dce534c4ae Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:42:23 2020 +0000 Adding missing space to if-block in env files to resolve runtime failure commit 0485442f5876b82de73c47429d3a70f58f0aa263 Merge: 26c84b3c 2006bbcb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Sep 3 15:37:50 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave * upstream/feature/gfsv16b-wave: adding pnt jobs as seperate jobs for env moving definitions of wavempexec and wave_mpmd from jobs to env lowering the resource requirement for wave prep job update module for cdo updates to resources for wave jobs Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py cleaning up wave point post scripts rename wave post script remove gridded so can rename updates to boundary point Remove extra space from line Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes fix typos updating WCOSS work around for CDO, CDO_ROOT is missing from module file adding module use for cdo module on wcoss dell updates for new weights file and adding cdo module for wave prep Adding new wavepostbndpnt and wavepostpnt jobs updating wave post scripts for restructured format updates to JJOBs for wave post point for new structure changing exit 0 to exit number for FATAL errors in ice prep for waves updating error message and exit if there is no current input file update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable renaming wave job and scripts update jobs for waves Issue #94 - pull in two fixes for wave job setup in free-forecast mode updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking updates from gefs post workflow: updates for re-run case as well as extra error messages commit 26c84b3ca81dec965ab31d00409b537f61174dc1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Sep 3 14:06:29 2020 +0000 Issue #1: remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py commit 609e157c2477b662b55bbf3d53999cdd30856bc8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:35:28 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs commit b0bebad6258bd81c0b0c89b559a04d9b059c838e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 20:08:01 2020 +0000 Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete commit 084c89e3d562f8c9977eaa17624646be388f7854 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Sep 2 19:58:37 2020 +0000 Issue #1: set n_sponge=42 in gfs section of config.fcst commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:22:38 2020 +0000 adding pnt jobs as seperate jobs for env commit c61cd59488b64ead77e13b2eb5faeb383d052ea0 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 19:02:21 2020 +0000 moving definitions of wavempexec and wave_mpmd from jobs to env commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030 Merge: 4e7975d2 70abda26 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Sep 2 17:45:26 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave Conflicts: parm/config/config.resources ush/rocoto/setup_workflow.py ush/rocoto/setup_workflow_fcstonly.py commit 70abda260dc9ab47533d25cd570dd055c4644123 Merge: 0a31d568 52e987ac Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 10:28:22 2020 -0400 Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown Add downstream wave jobs to GFSv16 commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 14:09:57 2020 +0000 Remove unneeded settings from config.post commit 52e987ac67477932e5b034321cf52f1cc756081c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:05:42 2020 +0000 Added null DBNROOT to wave awips configs commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd Merge: 074f2782 add6ea0b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Sep 2 13:02:41 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown commit 4e7975d265857e4e634e0c7352f6ed2de1a99336 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 22:45:05 2020 +0000 lowering the resource requirement for wave prep job commit add6ea0bae2c56bba2e3d76460771095b98786b1 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Sep 1 19:40:10 2020 +0000 Issue #1: rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65 Merge: 4c9978a8 595edcfa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 15:00:08 2020 -0400 Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs Adding WAFS jobs to GFSv16 commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 18:48:44 2020 +0000 modified: checkout.sh to use gldas_gfsv16_release.v1.6.0 commit 595edcfaaf1372889c8d569e01ec4dfefb51c469 Merge: 8a593c8d 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 17:30:08 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Sep 1 17:18:27 2020 +0000 update module for cdo commit 074f2782438471740453e356b856a4756e59c858 Merge: a1a3d69b 8a593c8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:30:56 2020 +0000 Sync with WAFS branch commit a1a3d69ba40564f550053b99b4328ba41c7cc45d Merge: 249b6ef7 06bda7de Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:22:20 2020 +0000 Sync merge with feature/gfsv16b commit 8a593c8df03d8a879c5488fbd671fef94f5d867d Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:09:49 2020 +0000 Update to WAFS tag and added SENDDBN_NTC to both base configs commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe Merge: 95ec3329 eabda84f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Sep 1 14:03:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 06bda7dec74831951034b72c83abbb2d994ee539 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 14:02:44 2020 +0000 modified: link_fv3gfs.sh to not link or copy 0readme fix_chem fix_fv3 fix_sfc_climo which are not used by GFS.v16 and are of large size commit eabda84f97c11251f672d95bb604ad0c50e8da18 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 13:48:11 2020 +0000 modified: link_fv3gfs.sh to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Sep 1 03:59:53 2020 +0000 modified: link_fv3gfs.sh to allow "fix" directories to be removed before rerunning link_fv3gfs.sh for RUN_ENVIR=nco case commit 95ec3329e72a54b0dabdccdecd467972c4914dcd Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 18:57:32 2020 +0000 Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a Merge: 8da41916 3282a899 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:58:55 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs commit 3282a8996ab0510699932a53897b87730b2cc492 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 31 17:47:37 2020 +0000 Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 18:46:57 2020 +0000 Remove UFS_UTILS ecf extensions commit f7a92dbc1c3ad822d3b8e567967e91384631288d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri Aug 28 18:09:26 2020 +0000 Issue #1: (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel commit 249b6ef761fb41b5d102b282fccedeb827192dff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:52:54 2020 +0000 Remove ecf script name extensions from downstream wave scripts commit 004a29f39204314159d2cbd028950cfaba07cf33 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:50:03 2020 +0000 Add new downstream wave jobs to workflow commit 8da4191644ff55f46e8f394e4e1d29641d3c117c Merge: 8f97726a 6319bda4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:42:11 2020 +0000 Sync merge with feature/gfsv16b commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 16:39:50 2020 +0000 Add new downstream WAFS jobs commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 28 15:41:55 2020 +0000 Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension commit 8f7615c76f76611d748246a80d9286de7c4d3295 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:53:25 2020 +0000 Issue #1: remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Aug 27 20:47:14 2020 +0000 Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 27 20:25:45 2020 +0000 updates to resources for wave jobs commit f0b9a98973b7983eadab51c7009723b5d0b4a564 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 23:04:02 2020 +0000 Issue #1: update name of DA enkf chgres script in config.echgres commit 01f33c498bf0b5c0d48486cd04dab9c93c721906 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Aug 26 20:58:29 2020 +0000 Issue #1: Rename DA enkf chgres job and script as per EE2 guidance commit 7d3f37819aba17dc794d10f7453061802779b435 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 18:35:59 2020 +0000 Workflow changes for wave gempak and awips downstream jobs commit 485632eafe37c1866011af1bd0a601fb1c7adc4c Merge: 2946baad e191fd4b Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Wed Aug 26 11:49:40 2020 -0400 Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit e191fd4bb87af787feab486bf072fe4dce7f12f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 15:47:49 2020 +0000 Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py commit 4641a72e1ced493c7ec5d837a3093908e388b5df Merge: a1b08c92 25ae4899 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 26 11:33:23 2020 -0400 Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels. commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 26 14:25:36 2020 +0000 feature/gfsv16b: Add Cory's updates to build 'enkf_chgres_recenter_nc' on Cray. Issue #102. commit 2946baad88d908b32793f542cab42f0c89adf009 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Aug 26 13:44:06 2020 +0000 cleaning up wave point post scripts commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf Merge: 727c3ffd a1b08c92 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Aug 25 20:20:17 2020 +0000 feature/gfsv16b: Merge updates from authoratative feature/gfsv16b branch. Issue #112. commit a1b08c92892278453f25c2530f8b8fb968af9a34 Merge: 45ad029b ce3816d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 16:01:57 2020 -0400 Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen Feature/gfsv16 wave prdgen commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6 Merge: b0c91610 45ad029b Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Tue Aug 25 19:55:53 2020 +0000 Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen Issue #94 Adding prdgen for waves commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:02:22 2020 +0000 rename wave post script commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:01:41 2020 +0000 remove gridded so can rename commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 25 19:00:20 2020 +0000 updates to boundary point commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9 Merge: 98d6c163 b74b21e7 Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Tue Aug 25 14:15:57 2020 -0400 Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave Feature/gfsv16b wave commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:14:15 2020 +0000 Remove extra space from line commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 18:12:04 2020 +0000 Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes commit 45ad029bad4367961e5eff987f27226b0ac78d5a Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Aug 25 13:40:45 2020 +0000 Issue #1: several minor changes * Externals.cfg and sorc/checkout.sh: update to tag verif_global_v1.10.1 * jobs/rocoto/arch.sh: update ARCDIR cp to use new path to tracker output * scripts/run_gfsmos_master.sh.dell: remove module purge from mos driver script commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1 Merge: d5861551 5190efb1 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Aug 25 09:20:42 2020 -0400 Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b Issue #117 Modufy Bufr station Hilo's grid point representation commit 5190efb119c6eec6a7c67d90327dee4666307541 Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov> Date: Tue Aug 25 12:30:45 2020 +0000 Issue #117 Modufy Bufr station Hilo's grid point representation commit 98d6c16336e5b0a3241174c54b7631667a4f919d Merge: 0eacf5e2 32bd57ef Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:39 2020 +0000 Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 22:27:28 2020 +0000 fix typos commit b0c9161061302ccf4b890cceabe5b4eaecb67e61 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 22:25:05 2020 +0000 Issue #94 changing native by interpolated grids for gempak commit 8a68d3c6d6996f389609d5961f32f0db116797d1 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 21:47:44 2020 +0000 Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 20:35:39 2020 +0000 updating WCOSS work around for CDO, CDO_ROOT is missing from module file commit a2d06bb0bf82ee48899cb26ea9abf2331b543107 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:55:02 2020 +0000 adding module use for cdo module on wcoss dell commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Aug 24 18:29:36 2020 +0000 updates for new weights file and adding cdo module for wave prep commit 96655fbe5b5daf130d4a9a458ce47059c047376a Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 16:56:37 2020 +0000 Issue #94 removing modulefiles load from j-jobs commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2 Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov> Date: Mon Aug 24 14:32:26 2020 +0000 Issue #94 Solving reviewers comments commit c9598a3207bb06cbd7d2619d97f723f6511da9a4 Merge: bf97710b 92a2a43d Author: Jessica Meixner <jessica.meixner@noaa.gov> Date: Mon Aug 24 10:12:43 2020 -0400 Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave Adding new wavepostbndpnt and wavepostpnt jobs commit 92a2a43db190982944b4166b929a791a1b0b0750 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 24 14:06:23 2020 +0000 Adding new wavepostbndpnt and wavepostpnt jobs commit bf97710bece30195679740b0de2b32e0adc6c3c6 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 21 00:20:56 2020 +0000 updating wave post scripts for restructured format commit a914521cec478667191b365e2a2a62e3553e0ff7 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 23:52:47 2020 +0000 updates to JJOBs for wave post point for new structure commit 1f195f8d432072f4e4f66406ea6b09256a185d2b Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:20:28 2020 +0000 changing exit 0 to exit number for FATAL errors in ice prep for waves commit f836a7869dbb88badd93fcd9d08314284eee4f96 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 15:17:28 2020 +0000 updating error message and exit if there is no current input file commit 529cc3692f4fc003295584e761279be3c9405b68 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:50:50 2020 +0000 update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable commit 57c4258ba73778fe95118ebfae98c4bbf012ae37 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:09:22 2020 +0000 renaming wave job and scripts commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a Merge: da292216 d5861551 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 14:02:54 2020 +0000 Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost commit da2922163922f4b4b14dba78dba36e9eced3a2c5 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Thu Aug 20 13:50:15 2020 +0000 update jobs for waves commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 20:09:47 2020 +0000 Issue #94 renaming the J-jobs commit 036617c8a9b5da765b82c276f7b087aa4e16d679 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 14:24:01 2020 +0000 Issue #94 Updating the modulefiles for waves-prdgen commit d5861551ae5b1fe2c2b00802159a42f7fde06357 Merge: 9b923ac3 0e0699aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 09:49:08 2020 -0400 Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure GFSv16 restructure for new $COMPONENT subfolder commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Wed Aug 19 13:47:44 2020 +0000 Issue #94 adding waves-prdgen to gfsv16 commit 0e0699aac7cb00988c999546dcdf3a52b11706e3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 19 13:47:29 2020 +0000 Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77 Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Date: Tue Aug 18 21:16:19 2020 +0000 Issue #94 adding waves-prdgen for gfsv16 commit 0b2744e53a35c570178b7e6cd7ede72b6255c579 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit 4888001e76d24277b3a75d1d520945383f49d456 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Aug 14 18:55:40 2020 +0000 updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking commit 00dc1973010b68e65e176c90a1eeaef359b7beae Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Aug 14 17:36:31 2020 +0000 Issue #94 - pull in two fixes for wave job setup in free-forecast mode commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf Merge: 0c06cda7 9b923ac3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:49:52 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:37:51 2020 +0000 Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 18:50:44 2020 +0000 Issue #94 - update CFP module version on WCOSS-Dell commit b73d25224d8208291048b774a91497928b051713 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 17:58:55 2020 +0000 Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars commit 485ee56c1e772e8efa944ee9a3f350130d49a718 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Aug 10 13:00:42 2020 +0000 Issue #94 - fix AWIPS file dependency commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Aug 7 13:34:22 2020 +0000 Issue #94 - updates for FSU tracker commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Aug 5 17:14:04 2020 +0000 Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post commit 563d2931378c3d6276212cc9c4e2a4e9a286589c Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Aug 4 18:19:47 2020 +0000 Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh commit 8a1fea478bcfdec3ad436e77fdfe8c601a050c77 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 30 18:27:57 2020 +0000 Issue #94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team commit f54d938ac8faf3c5d0362770b645dcef57b43c30 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 29 14:28:03 2020 +0000 Issue #94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available commit d3866af6cc8060f88b3bd780b7f6a6f52a8ecba0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 29 13:39:07 2020 +0000 Issue #94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos commit 9c2791ed037d62f35aa33875c20de8ac3f823337 Merge: e8a714b2 d1751309 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 27 14:44:59 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit e8a714b2fa20cce87ed018b3a9215bef37ee0d10 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 27 14:37:34 2020 +0000 Issue #94 - retire BASE_SVN commit 5867d4b3de7b6ee7d8f913d573b4a0f44d973320 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Fri Jul 24 15:00:41 2020 +0000 updates from gefs post workflow: updates for re-run case as well as extra error messages commit 03daf01d440e702deccfcd246db069783f2c513d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 24 14:14:25 2020 +0000 Issue #94 - removing new install script, will introduce via another branch, needs more testing commit 9c0765cec06ea0f80528cba722884a4971beb345 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 24 14:08:36 2020 +0000 Issue #94 - add to gempak scripts and cleanup based on PR feedback commit fb70d6fb7a2407bd17c2c587224e66401a6cf1c0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 23 14:35:56 2020 +0000 Issue #94 - updating GLDAS and EMC_post tags in Externals.cfg commit 3bfdc01419b1ea8748f8ce7ebcf00ac6b520f8d7 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 23 14:34:28 2020 +0000 Reverting link_fv3gfs.sh, will commit in different changeset commit d1751309fc1999cdc4fdbc603e429ee61fbcf38c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jul 23 11:20:15 2020 +0000 Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env commit 821c93cae54d9fa24887cbe2072df4f63aeadb7d Merge: 95ce8235 145f8105 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 21 17:15:43 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 95ce823552c20aa15426c4c98feb3c7d147ec89e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 21 14:10:09 2020 +0000 Issue #94 - new GLDAS tag with atmos directory commit 145f81056802cb7246a50f7951c2e191a994032f Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jul 20 21:09:40 2020 +0000 Issue #1: add enkf member sfcf006.nc to enkf tarballs commit ab89088d3a59ee5d5389fa8e527e0444692c1542 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 20 19:07:02 2020 +0000 Issue #94 - component checkout updates to use forks and new UPP tag commit 4eec6641424d3947ae792f632f9b401bb569173a Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 20 13:31:23 2020 +0000 Issue #94 - fix dirpath in ush/hpssarch_gen.sh commit 727c3ffdeee5b77e65b6665b2cf34b6a30736bbc Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jul 17 18:27:26 2020 +0000 feature/gfsv16b This commit references #102. Some cleanup to enkf_chgres_recenter_nc. commit d0378245016ba506b9e57a35dcaed8ce10830a9a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jul 17 15:59:59 2020 +0000 feature/gfsv16b This commit references #102. Initial updates to enkf_chgres_recenter_nc to output any number of vertical levels. Turn off horizontal interpolation if input and output grids are the same. commit 273c5353bc310b22459fe605662c07922a41e4f4 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 17:52:43 2020 +0000 Issue #94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting commit 3d9f0dc81a63b5d1b54981314fac36a82119e811 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 17:19:21 2020 +0000 Issue #94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead commit 19d3f72b5f6f1ec145cf95e47c1fe9ca970d40cb Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 16:05:56 2020 +0000 Issue #94 - updates to wave scripts based on NCO feedback commit 0056b413a65aea9700561c5a9b07946fb34be6b5 Merge: 987d8cf5 d7425d02 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jul 16 13:35:13 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 987d8cf5621e8c302d0f9a7941f4d74222fbf218 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 15 17:50:34 2020 +0000 Issue #94 - added and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention commit 49825b3b93080b70b56752477a9406e1765ecdf3 Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Date: Tue Jul 14 23:04:08 2020 +0000 GitHub Issue#94 update gempak's ush scripts commit d7425d02bb9027fe3ea5ceb31d515d70dddb4ec4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:50:54 2020 +0000 Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 49772711c37d74740427c241a477afe21ee62d7c. commit 49772711c37d74740427c241a477afe21ee62d7c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:45:32 2020 +0000 modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos commit 8b0f57fdfd4a8710e176f0035356fb01d781dd70 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 13 23:43:55 2020 +0000 modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. commit 37e0f57d948fa98c66fcc9d9695de2769a4a38d2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 13 17:26:52 2020 +0000 Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh commit 663542ea2219eae322437058693cae3ade14e125 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 10 20:01:17 2020 +0000 Issue #94 - fix dependencies with in the path commit 866c4c4cf1a2cd177fed81396ddb40e657e8d55b Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jul 10 15:22:33 2020 +0000 Issue #94 - convert variables into hard-coded values per feedback commit d57fc02801232de745e1c66b6cb0b459218dc042 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 22:59:35 2020 +0000 modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) commit 233f9f615ab1d5cee29c45143655978112bb79fe Merge: 506e3bf4 ae7dbdb2 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 8 19:44:40 2020 +0000 Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure commit 506e3bf4d627093b06bc0a2d5cac63f99767742f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jul 8 17:43:14 2020 +0000 Issue #94 - initial add of COMPONENTatmos variable to scripts commit ae7dbdb2a37daabaa178b8924bad22684a673d4e Merge: 6e73de0c 58fb7954 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 11:30:07 2020 -0400 Merge pull request #96 from NOAA-EMC/feature/gfsv16b_restart modified: exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability commit 58fb79548b2ac34a477b4520ca99ce32280b00fd Merge: 4a1cf2b6 6e73de0c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 7 15:58:25 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 6e73de0ce5cd82c9e97d8078dd1ddd253f05a258 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 15:03:09 2020 +0000 Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" commit 22ad770016b8a61bb672f1f76d62cb3d133f247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 13:47:26 2020 +0000 Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 commit 4a1cf2b6f45a76b91fbfa048def2cd647598e154 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 6 23:59:03 2020 +0000 further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well commit 5fe1a217d28e6710502b9524d3e3cce035364c37 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jul 4 19:43:29 2020 +0000 modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. commit 3fe6f9fc3aff9cff75aa6179cc545e635d28f312 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 29 19:44:12 2020 +0000 Issue #94 - commit initial version of new installation script commit 30e56f2e84c6f1a66dc73db53cabc898b657374c Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 29 19:41:31 2020 +0000 Issue #94 - generalization updates to link script - change 'nco' mode to 'prod' mode - change 'emc' mode to 'dev' mode - update machine values to match target names commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52e299482687d84ef6686e6a65f64fe57f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e54988f2fb2f4cda0510af02a090dfdda2e Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c368a2d55018e4a1567717efd7ffa09f14d9 Merge: 99277ae3 1e56eddb Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56eddb055b1414385e276ac73255d3ede9e9e9 Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae34ef50454fa15e7e28b564c2e34e3406c Merge: 14dd3c94 4f8d5a5f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5f28c7120905fe36e9254f0199da986188 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c94938b0e69601e25a42104b2fc23944ebd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues #136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue #152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002425a03905bfc6ef63d3f43a6813814497 Merge: df89cc80 dd599eaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48 Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc800d3c479c132a5e679a2562af91b32f62 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368 Merge: 1dd83b81 965ff420 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff4203f132c6b032398a7a56494329714247c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue #85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d714119960feed1f0807708cdf85677ab81d73 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b818e9f2babbd11b762951721cf2a4c415e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4d009047251c535eea6fdc5958e58e68f7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0715a29e52e4d7133a8259c492229a5c22 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5c680d54297101fae573579be24411a94a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed4119b067905f5a4bf47656557f2211883 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst commit d8782697fa698c00daa242a656246cf5f5d9b537 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621727701e9526feccc7ce8ebd43be31860f Merge: 22b735d3 295cd05f Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05f306e4d70d09880a41fd60fadce74bab3 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d310413989568dca4b30d19eadcd4c3fdb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60197c38acb724cfdf4a30a20417a6618b4 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b2d43acd13a08bf1d5ab2251db90a11d32 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa93d537da5b165297e0dc34ba88856d4c7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885b082e8a837aef095deb6a3343fca26cb3 Merge: 968b9860 bf5a5c44 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd Merge: b27a01db 968b9860 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b98609fe2016518f3adcc6b178bdca0b73bcf Merge: 9b36cfde dc512dd6 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfde2032e9296cc7567704e1274560b2897e Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd68df088361c340ac01ec3c8130707ffd1 Merge: a7b25a3b 987c32af Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01db1516f9aa229e75957885ffa2125d31d6 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba895481be53906878f58c2998a398bc59870ea2 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac802b289cb9b6867c003ff27ef1711327a Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29b62cf747662909ff50a6bf8f327127a09 Merge: 49abb906 e87b5a18 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb9068effc5aeeba8f861f44207b67ff442c9 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d71310132813c1066a9b0f881ef686602a23c4 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8dff96e45e690c8e1a2932c8d846afb1655 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f103bab78f9d2426599f976dc318eff4e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236b233b6bcf2dc008006a82ccd459d7e3f3 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84041f2a2f221e85d6543657f229408328c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a77e59660f4b58279375a83d179c891b385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d3552fd971cde09148bc392ad93bf104e0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a1335ef3feb0242245b5661f22650a0a2e576 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2

This adds cellular automata perturbations of emissions. It points to a new gsl/develop-chem branch of stochastic_physics.

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RussTreadon-NOAA added a commit that referenced this issue Jun 15, 2020

Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst

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RussTreadon-NOAA added a commit that referenced this issue Jun 16, 2020

Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres varia…

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…bles to env

RussTreadon-NOAA added a commit that referenced this issue Jun 18, 2020

Issue #85: update DA checkout to point at release/gfsda.v16.0.0

965ff42

RussTreadon-NOAA closed this as completed Jun 18, 2020

zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022

Cellular automata perturbations of emissions (NOAA-EMC#85)

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This adds cellular automata perturbations of emissions. It points to a new gsl/develop-chem branch of stochastic_physics.

TerrenceMcGuinness-NOAA added a commit that referenced this issue Jun 8, 2023

Merge pull request #85 from TerrenceMcGuinness-NOAA/feature_1643_badges

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Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

RussTreadon-NOAA commented Jun 15, 2020

RussTreadon-NOAA commented Jun 18, 2020

Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

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RussTreadon-NOAA commented Jun 15, 2020

RussTreadon-NOAA commented Jun 18, 2020