- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg

Refs: NOAA-EMC#433

- commit GFSv16.2 WCOSS2 operational GFS defs files as of April 7th 2022
- final changes to defs files will be merged later

Refs: NOAA-EMC#399

Refs: NOAA-EMC#399

…OAA-EMC#768)

REF:767

- In move to WCOSS2 the transfer*list files were moved into a new
transfer folder under the upper-level parm folder.

Refs: NOAA-EMC#419

- The transfer*list files were updated in operations during the move
from WCOSS1 to WCOSS2.
- The beginning of the path within the transfer*list files was updated
from:
  com/gfs/_ENVIR_
to:
  _COMROOT_/gfs/_SHORTVER_

Refs: NOAA-EMC#419

- Add release notes for GFSv16.1 and GFSv16.2 versions that were added
into the operations branch but not yet in the develop branch.

Refs: NOAA-EMC#419

* develop:
  Updated GFS transfer*list files from operations (develop) (NOAA-EMC#918)

- Add /gempak subfolder where needed in gempak ush scripts.
- Remove unneeded commented out path settings from older iterations.

Refs: NOAA-EMC#419

- Cleaning out older GFS version release notes.
- Includes current GFSv16.2.1 release notes, will commit GFSv16.3
release notes with implementation this fall.
- Will then keep only the latest release notes moving forward.

Refs: NOAA-EMC#419

* develop:
  Add postsnd job when bufrsnd it on (NOAA-EMC#926)

* develop:
  Add GDASapp (first wave of JEDI changes) (NOAA-EMC#871)

* develop:
  WCOSS2 gempak ush scripts updates and cleanup of old release notes (NOAA-EMC#920)

* develop:
  change gdasechgres dependency to just gdasefcs01 instead of gdasefmn (NOAA-EMC#933)
  Remove obsolete platforms (WCOSS1, Dell, Cray, Theia) references. (NOAA-EMC#922)
  Optimize DA clone, build, and link (NOAA-EMC#931)

* develop:
  Initial commit of directory comparison tools (NOAA-EMC#934)
  Add preamble, convert to bash, and remove env (NOAA-EMC#929)
  minimal intervention to create a data-atmosphere xml (NOAA-EMC#936)
  Remove Cray, Dell, WCOSS1 from module-setup.sh.inc (NOAA-EMC#943)
  bring GDASApp jjobs and exscripts to global-workflow (NOAA-EMC#941)

* develop:
  Remove SDATE=CDATE IAU block in NCO config.base (NOAA-EMC#963)
  Updates for P8  (NOAA-EMC#946)
  Fix GLDAS j-job link (NOAA-EMC#954)
  Add ocean post to archive dependencies (NOAA-EMC#949)

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

- Add a WCOSS2 block to machine-setup.sh.
- Change the Hera and Orion blocks to use "module reset" instead of
"module purge"; includes hack from RDHPCS sysadmins for using the
"module reset" command on those machines successfully.

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

* develop:
  Externals.cfg was stale and had drifted off (NOAA-EMC#965)
  Fix post comparison with zero-padded numbers (NOAA-EMC#964)

* develop:
  Add initial config files for global aerosol DA (NOAA-EMC#986)
  Update diag table to remove wav-ocn coupling fields (NOAA-EMC#979)
  use a robust Findwgrib2.cmake to find wgrib2 built w/ native wgrib2 build (NOAA-EMC#970)

Refs: NOAA-EMC#419

Refs: NOAA-EMC#419

- Change the path used to check if on WCOSS2 from "lfs/h2" to "/lfs/f1"

Refs: NOAA-EMC#419

* develop:
  Update UFS_UTILS tag to `ufs_utils_1_8_0` (NOAA-EMC#1001)
  Fix preamble id (NOAA-EMC#996)
  Add missing "atmos" into job dependencies (NOAA-EMC#998)
  Bugfix in arch.sh to remove hardwired "htar" (NOAA-EMC#992)
  Add in stubs for aerosol DA tasks + bugfix for setup_expt where cycled and ATMA are used (NOAA-EMC#990)
  Add GSI monitor scripts (NOAA-EMC#969)
  Fix product generation at some fcst hrs (NOAA-EMC#988)

- Pull out the changes to replace "module purge" with "module reset" for
the R&D machines in machine-setup.sh.
- Will commit separately after testing on R&Ds.
- Removing non-WCOSS2 changes from branch ahead of WCOSS2 build PR.

Refs: NOAA-EMC#419

- Create new workflow/hosts/wcoss2.yaml file
- Update NWPROD->PACKAGEROOT variable in hera.yaml and orion.yaml
- Update NWPROD->PACKAGEROOT variable in setup_expt.py

Refs NOAA-EMC#419

Refs NOAA-EMC#419

- Need to add new jobs to WCOSS2.env file still.

Refs NOAA-EMC#419

- Update native tag in workflow_tasks.py to add PBSpro support.
- Add "debug=true" and "place=vscatter" into rocoto native tag in
generated xmls.
- Set to make job exclusive if "is_exclusive=True" is set.

Refs NOAA-EMC#419

- Update config copies at end of link_workflow.sh to also copy
config.fv3.nco.static to config.fv3 and copy config.resources.nco.static
to config.resources when $RUN_ENVIR = nco.

Refs NOAA-EMC#419

- Similar to hack in GSI, load the para install of the ncdiag module on
WCOSS2 for use during runtime.

Refs NOAA-EMC#419

* develop:
  Add shell linter Github action for pull requests (NOAA-EMC#1007)
  Build updates for WCOSS2 (NOAA-EMC#1002)
  Update checkout.sh to remove git submodule update for upp checkout (NOAA-EMC#768)
  Add 06, 12, and 18 WCOSS2 operational GFS defs
  Add WCOSS2 operational GFS defs files
  Update repository name for EMC_post component to UPP

* develop:
  Correct shell linter config (NOAA-EMC#1013)
  Correct diagnostic file handling in ush/ozn_xtrct.sh (NOAA-EMC#1016)

- Change webtitle makefile to use ftn instead of ifort and add traceback
flags to build.
- Clean up ush/make_tif.sh.

Refs NOAA-EMC#419

- Change NWPROD to PACKAGEROOT.
- Change NWROOT to OPSROOT.
- Retire jlogfile usage and references; includes removing postmsg.
- Add in some error checking for gfs_bufr job (from GDIT/Bo Cui).
- Some cleanup.

Refs NOAA-EMC#419

- Retire jlogfile and postmsg usage and references.
- Change NWPROD to PACKAGEROOT.
- Change COMINgfs to COMINobsproc in gempak script.
- Change RUN to RUN2 in awips script.

Refs NOAA-EMC#419

Refs NOAA-EMC#419

- Remove jlogfile references.
- Update fit2obs section for new version.
- Add COMINsyn setting with compath.py usage for tracker.

Refs NOAA-EMC#419

- Change HOMEobsproc_network to HOMEobsproc.

Refs NOAA-EMC#419

Refs NOAA-EMC#419

- Remove jlogfile reference.
- Change NWROOT to PACKAGEROOT.

Refs NOAA-EMC#419

- Remove config and env sourcing, as well as some additional settings (moving to JJOB script).
- Add JJOB script invocation: $HOMEgfs/jobs/JGFS_ATMOS_GEMPAK
- Some cleanup.

Refs NOAA-EMC#419

Refs NOAA-EMC#419

Refs NOAA-EMC#419

- Change NWROOT to PACKAGEROOT.
- Update PDY syntax.
- Update compath.py format.
- Some cleanup, including removal of RUN_ENVIR=nco blocks.
- Change wavempexec override to be prior setting of wavempexec.

Refs NOAA-EMC#419