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Add GSI background error covariance as an option for UFS DA variational assimilation #1104

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merged 9 commits into from
Nov 1, 2022
Merged

Add GSI background error covariance as an option for UFS DA variational assimilation #1104

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320bfb9
Add STATICB_TYPE to support various staticb sources for UFS DA (#1103)
RussTreadon-NOAA Oct 31, 2022
050937e
Add gsibec to link_workflow.sh and fix_ver (#1103)
RussTreadon-NOAA Oct 31, 2022
1f6e2b5
Correct STATICB_TYPE typo (#1103)
RussTreadon-NOAA Oct 31, 2022
8bf78a3
Correct BERROR_YAML path error, add logic to handle various staticb s…
RussTreadon-NOAA Oct 31, 2022
e459130
Set STATICB_TYPE to identity, add CASE logic to UFS DA variational an…
RussTreadon-NOAA Oct 31, 2022
9d4d730
correct CASE logic in UFS DA variational analysis script (#1103)
RussTreadon-NOAA Oct 31, 2022
3bbbff7
Address shellcheck warnings in exgdas_global_atmos_analysis_run.sh (#…
RussTreadon-NOAA Nov 1, 2022
e31144f
Address additional shellcheck warnings in exgdas_global_atmos_analysi…
RussTreadon-NOAA Nov 1, 2022
bcdc0ad
Add quotes around arguments in if test (shellcheck warning) (#1103)
RussTreadon-NOAA Nov 1, 2022
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11 changes: 6 additions & 5 deletions parm/config/config.atmanal
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Expand Up @@ -5,11 +5,12 @@

echo "BEGIN: config.atmanal"

export OBS_YAML_DIR=$HOMEgfs/sorc/gdas.cd/parm/atm/obs/config/
export OBS_LIST=$HOMEgfs/sorc/gdas.cd/parm/atm/obs/lists/gdas_prototype.yaml
export ATMVARYAML=$HOMEgfs/sorc/gdas.cd/parm/atm/variational/3dvar_dripcg.yaml
export BERROR_YAML=$HOMEgfs/sorc/gdas.cd/parm/atm/berror/staticb_identity.yaml
export FV3JEDI_FIX=$HOMEgfs/fix/gdas
export OBS_YAML_DIR=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/config/
export OBS_LIST=${HOMEgfs}/sorc/gdas.cd/parm/atm/obs/lists/gdas_prototype.yaml
export ATMVARYAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/variational/3dvar_dripcg.yaml
export STATICB_TYPE="identity"
export BERROR_YAML=${HOMEgfs}/sorc/gdas.cd/parm/atm/berror/staticb_${STATICB_TYPE}.yaml
export FV3JEDI_FIX=${HOMEgfs}/fix/gdas
export R2D2_OBS_DB='ufsda_test'
export R2D2_OBS_DUMP='oper_gdas'
export R2D2_OBS_SRC='ncdiag'
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10 changes: 8 additions & 2 deletions scripts/exgdas_global_atmos_analysis_run.sh
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Expand Up @@ -104,7 +104,9 @@ fi
# link fix files to $DATA
# static B
CASE_BERROR=${CASE_BERROR:-${CASE_ANL:-$CASE}}
$NLN $FV3JEDI_FIX/bump/$CASE_BERROR/ $DATA/berror
if [ $STATICB_TYPE = "bump" -o $STATICB_TYPE = "gsibec" ] ; then
Fixed Show fixed Hide fixed
$NLN $FV3JEDI_FIX/$STATICB_TYPE/$CASE_BERROR/ $DATA/berror
fi

# vertical coordinate
LAYERS=$(expr $LEVS - 1)
Expand Down Expand Up @@ -139,7 +141,11 @@ export err=$?; err_chk

################################################################################
# translate FV3-JEDI increment to FV3 readable format
atmges_fv3=$COMIN_GES/${GPREFIX}atmf006.ensres.nc
if [ $CASE_BERROR = $CASE ]; then
atmges_fv3=$COMIN_GES/${GPREFIX}atmf006.nc
else
atmges_fv3=$COMIN_GES/${GPREFIX}atmf006.ensres.nc
fi
atminc_jedi=$DATA/anl/atminc.${PDY}_${cyc}0000z.nc4
atminc_fv3=$COMOUT/${CDUMP}.${cycle}.atminc.nc
if [ -s $atminc_jedi ]; then
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2 changes: 1 addition & 1 deletion sorc/link_workflow.sh
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Expand Up @@ -179,7 +179,7 @@ if [ -d "${script_dir}/gdas.cd" ]; then
cd "${top_dir}/fix" || exit 1
[[ ! -d gdas ]] && mkdir -p gdas
cd gdas || exit 1
for gdas_sub in bump crtm fv3jedi; do
for gdas_sub in bump crtm fv3jedi gsibec; do
if [ -d "${gdas_sub}" ]; then
rm -rf "${gdas_sub}"
fi
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1 change: 1 addition & 0 deletions versions/fix.ver
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Expand Up @@ -10,6 +10,7 @@ export datm_ver=20220805
export gdas_bump_ver=20220805
export gdas_crtm_ver=20220805
export gdas_fv3jedi_ver=20220805
export gdas_gsibec_ver=20221031
export gldas_ver=20220920
export glwu_ver=20220805
export lut_ver=20220805
Expand Down