fix bug when calling unallocated diagnostics #30
Workflow file for this run
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name: Compile SHiELD SOLO and run tests | |
# This GitHub Action Workflow is running on the cloud shieldphysicsciintel cluster | |
# The tests are run inside of a container with the following software/libraries: | |
# -intel: 2023.2.0 | |
# -hdf5: 1.14.0 | |
# -netcdf-c: 4.9.2 | |
# -netcdf-fortran: 4.6.0 | |
# -cmake | |
# -libyaml | |
on: | |
pull_request: | |
branches: | |
- main | |
#this should cancel in progress ci runs for the same PR | |
#(e.g. a second commit on the same PR comes in while CI is still running) | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
checkout: | |
if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
runs-on: [shieldphysicsciintel] | |
name: Checkout Code | |
steps: | |
# It can take a long time (5-15 minutes) to spinup nodes | |
# so this salloc will prompt 46 nodes to startup and stay active for 20 min | |
# this is enough nodes for the first 17 tests to run in parallel, and we | |
# have 17 runners configured. | |
- run: salloc --partition=p2 -N 46 -J $GITHUB_SHA sleep 20m & | |
- run: /contrib/fv3/SHiELD_physics_CI/checkout.sh $GITHUB_REF $GITHUB_SHA | |
build: | |
if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
runs-on: [shieldphysicsciintel] | |
name: SOLO SHiELD build | |
needs: [checkout] | |
strategy: | |
fail-fast: true | |
max-parallel: 3 | |
matrix: | |
runpath: [/contrib/fv3/SHiELD_physics_CI/] | |
runscript: [swcompile.sh, nhcompile.sh, hydrocompile.sh] | |
steps: | |
- env: | |
RUNPATH: ${{ matrix.runpath }} | |
RUNSCRIPT: ${{ matrix.runscript }} | |
run: $RUNPATH/$RUNSCRIPT $GITHUB_REF $GITHUB_SHA | |
test: | |
if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
runs-on: [shieldphysicsciintel] | |
name: SOLO SHiELD test suite | |
needs: [checkout, build] | |
strategy: | |
fail-fast: false | |
max-parallel: 17 | |
matrix: | |
runpath: [/contrib/fv3/SHiELD_physics_CI/] | |
runscript: | |
# These are placed in order of largest to smallest jobs | |
#layout 8,8 needs 8 nodes on dvcimultiintel cluster | |
- C512r20.solo.superC.sh | |
- C768.sw.BTwave.sh | |
#layout 4,8 needs 4 nodes on dvcimultiintel cluster | |
- C256r20.solo.superC.sh | |
- C384.sw.BLvortex.sh | |
#layout 4,4 needs 2 nodes on dvcimultiintel cluster | |
- C128r20.solo.superC.sh | |
- C128r3.solo.TC.d1.sh | |
- C128r3.solo.TC.h6.sh | |
- C128r3.solo.TC.sh | |
- C128r3.solo.TC.tr8.sh | |
- C192.sw.BLvortex.sh | |
- C192.sw.BTwave.sh | |
- C192.sw.modon.sh | |
- C384.sw.BTwave.sh | |
#layout 4,1 and 2,2 need 1 node on dvcimultiintel cluster | |
- C96.solo.BCdry.hyd.sh | |
- C96.solo.BCdry.sh | |
- C96.solo.BCmoist.hyd.d3.sh | |
- C96.solo.BCmoist.hyd.sh | |
- C96.solo.BCmoist.nhK.sh | |
- C96.solo.BCmoist.sh | |
- C96.solo.mtn_rest.hyd.diff2.sh | |
- C96.solo.mtn_rest.hyd.sh | |
- C96.solo.mtn_rest.nonmono.diff2.sh | |
- C96.solo.mtn_rest.sh | |
- C96.sw.BLvortex.sh | |
- C96.sw.BTwave.sh | |
- C96.sw.modon.sh | |
- C96.sw.RHwave.sh | |
- d96_1k.solo.mtn_rest_shear.olddamp.sh | |
- d96_1k.solo.mtn_rest_shear.sh | |
- d96_1k.solo.mtn_schar.mono.sh | |
- d96_1k.solo.mtn_schar.sh | |
- d96_2k.solo.bubble.n0.sh | |
- d96_2k.solo.bubble.nhK.sh | |
- d96_2k.solo.bubble.sh | |
- d96_500m.solo.mtn_schar.sh | |
steps: | |
# This will end the slurm job started in the checkout job | |
- run: scancel -n $GITHUB_SHA | |
- env: | |
RUNPATH: ${{ matrix.runpath }} | |
RUNSCRIPT: ${{ matrix.runscript }} | |
run: $RUNPATH/$RUNSCRIPT $GITHUB_REF $GITHUB_SHA | |
shutdown: | |
if: always() && github.repository == 'NOAA-GFDL/SHiELD_physics' | |
runs-on: [shieldphysicsciintel] | |
name: Shutdown Processes | |
needs: [checkout, build, test] | |
strategy: | |
fail-fast: false | |
max-parallel: 17 | |
matrix: | |
test: | |
- C512r20.solo.superC | |
- C768.sw.BTwave | |
- C256r20.solo.superC | |
- C384.sw.BLvortex | |
- C128r20.solo.superC | |
- C128r3.solo.TC.d1 | |
- C128r3.solo.TC.h6 | |
- C128r3.solo.TC | |
- C128r3.solo.TC.tr8 | |
- C192.sw.BLvortex | |
- C192.sw.BTwave | |
- C192.sw.modon | |
- C384.sw.BTwave | |
- C96.solo.BCdry.hyd | |
- C96.solo.BCdry | |
- C96.solo.BCmoist.hyd.d3 | |
- C96.solo.BCmoist.hyd | |
- C96.solo.BCmoist.nhK | |
- C96.solo.BCmoist | |
- C96.solo.mtn_rest.hyd.diff2 | |
- C96.solo.mtn_rest.hyd | |
- C96.solo.mtn_rest.nonmono.diff2 | |
- C96.solo.mtn_rest | |
- C96.sw.BLvortex | |
- C96.sw.BTwave | |
- C96.sw.modon | |
- C96.sw.RHwave | |
- d96_1k.solo.mtn_rest_shear.olddamp | |
- d96_1k.solo.mtn_rest_shear | |
- d96_1k.solo.mtn_schar.mono | |
- d96_1k.solo.mtn_schar | |
- d96_2k.solo.bubble.n0 | |
- d96_2k.solo.bubble.nhK | |
- d96_2k.solo.bubble | |
- d96_500m.solo.mtn_schar | |
steps: | |
- run: scancel -n $GITHUB_SHA | |
- env: | |
JOB: ${{ github.sha }}_${{ matrix.test }} | |
run: scancel -n $JOB |