fix bug when calling unallocated diagnostics #30
Workflow file for this run
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| name: Compile SHiELD SOLO and run tests | |
| # This GitHub Action Workflow is running on the cloud shieldphysicsciintel cluster | |
| # The tests are run inside of a container with the following software/libraries: | |
| # -intel: 2023.2.0 | |
| # -hdf5: 1.14.0 | |
| # -netcdf-c: 4.9.2 | |
| # -netcdf-fortran: 4.6.0 | |
| # -cmake | |
| # -libyaml | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| #this should cancel in progress ci runs for the same PR | |
| #(e.g. a second commit on the same PR comes in while CI is still running) | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| checkout: | |
| if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: Checkout Code | |
| steps: | |
| # It can take a long time (5-15 minutes) to spinup nodes | |
| # so this salloc will prompt 46 nodes to startup and stay active for 20 min | |
| # this is enough nodes for the first 17 tests to run in parallel, and we | |
| # have 17 runners configured. | |
| - run: salloc --partition=p2 -N 46 -J $GITHUB_SHA sleep 20m & | |
| - run: /contrib/fv3/SHiELD_physics_CI/checkout.sh $GITHUB_REF $GITHUB_SHA | |
| build: | |
| if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: SOLO SHiELD build | |
| needs: [checkout] | |
| strategy: | |
| fail-fast: true | |
| max-parallel: 3 | |
| matrix: | |
| runpath: [/contrib/fv3/SHiELD_physics_CI/] | |
| runscript: [swcompile.sh, nhcompile.sh, hydrocompile.sh] | |
| steps: | |
| - env: | |
| RUNPATH: ${{ matrix.runpath }} | |
| RUNSCRIPT: ${{ matrix.runscript }} | |
| run: $RUNPATH/$RUNSCRIPT $GITHUB_REF $GITHUB_SHA | |
| test: | |
| if: github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: SOLO SHiELD test suite | |
| needs: [checkout, build] | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 17 | |
| matrix: | |
| runpath: [/contrib/fv3/SHiELD_physics_CI/] | |
| runscript: | |
| # These are placed in order of largest to smallest jobs | |
| #layout 8,8 needs 8 nodes on dvcimultiintel cluster | |
| - C512r20.solo.superC.sh | |
| - C768.sw.BTwave.sh | |
| #layout 4,8 needs 4 nodes on dvcimultiintel cluster | |
| - C256r20.solo.superC.sh | |
| - C384.sw.BLvortex.sh | |
| #layout 4,4 needs 2 nodes on dvcimultiintel cluster | |
| - C128r20.solo.superC.sh | |
| - C128r3.solo.TC.d1.sh | |
| - C128r3.solo.TC.h6.sh | |
| - C128r3.solo.TC.sh | |
| - C128r3.solo.TC.tr8.sh | |
| - C192.sw.BLvortex.sh | |
| - C192.sw.BTwave.sh | |
| - C192.sw.modon.sh | |
| - C384.sw.BTwave.sh | |
| #layout 4,1 and 2,2 need 1 node on dvcimultiintel cluster | |
| - C96.solo.BCdry.hyd.sh | |
| - C96.solo.BCdry.sh | |
| - C96.solo.BCmoist.hyd.d3.sh | |
| - C96.solo.BCmoist.hyd.sh | |
| - C96.solo.BCmoist.nhK.sh | |
| - C96.solo.BCmoist.sh | |
| - C96.solo.mtn_rest.hyd.diff2.sh | |
| - C96.solo.mtn_rest.hyd.sh | |
| - C96.solo.mtn_rest.nonmono.diff2.sh | |
| - C96.solo.mtn_rest.sh | |
| - C96.sw.BLvortex.sh | |
| - C96.sw.BTwave.sh | |
| - C96.sw.modon.sh | |
| - C96.sw.RHwave.sh | |
| - d96_1k.solo.mtn_rest_shear.olddamp.sh | |
| - d96_1k.solo.mtn_rest_shear.sh | |
| - d96_1k.solo.mtn_schar.mono.sh | |
| - d96_1k.solo.mtn_schar.sh | |
| - d96_2k.solo.bubble.n0.sh | |
| - d96_2k.solo.bubble.nhK.sh | |
| - d96_2k.solo.bubble.sh | |
| - d96_500m.solo.mtn_schar.sh | |
| steps: | |
| # This will end the slurm job started in the checkout job | |
| - run: scancel -n $GITHUB_SHA | |
| - env: | |
| RUNPATH: ${{ matrix.runpath }} | |
| RUNSCRIPT: ${{ matrix.runscript }} | |
| run: $RUNPATH/$RUNSCRIPT $GITHUB_REF $GITHUB_SHA | |
| shutdown: | |
| if: always() && github.repository == 'NOAA-GFDL/SHiELD_physics' | |
| runs-on: [shieldphysicsciintel] | |
| name: Shutdown Processes | |
| needs: [checkout, build, test] | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 17 | |
| matrix: | |
| test: | |
| - C512r20.solo.superC | |
| - C768.sw.BTwave | |
| - C256r20.solo.superC | |
| - C384.sw.BLvortex | |
| - C128r20.solo.superC | |
| - C128r3.solo.TC.d1 | |
| - C128r3.solo.TC.h6 | |
| - C128r3.solo.TC | |
| - C128r3.solo.TC.tr8 | |
| - C192.sw.BLvortex | |
| - C192.sw.BTwave | |
| - C192.sw.modon | |
| - C384.sw.BTwave | |
| - C96.solo.BCdry.hyd | |
| - C96.solo.BCdry | |
| - C96.solo.BCmoist.hyd.d3 | |
| - C96.solo.BCmoist.hyd | |
| - C96.solo.BCmoist.nhK | |
| - C96.solo.BCmoist | |
| - C96.solo.mtn_rest.hyd.diff2 | |
| - C96.solo.mtn_rest.hyd | |
| - C96.solo.mtn_rest.nonmono.diff2 | |
| - C96.solo.mtn_rest | |
| - C96.sw.BLvortex | |
| - C96.sw.BTwave | |
| - C96.sw.modon | |
| - C96.sw.RHwave | |
| - d96_1k.solo.mtn_rest_shear.olddamp | |
| - d96_1k.solo.mtn_rest_shear | |
| - d96_1k.solo.mtn_schar.mono | |
| - d96_1k.solo.mtn_schar | |
| - d96_2k.solo.bubble.n0 | |
| - d96_2k.solo.bubble.nhK | |
| - d96_2k.solo.bubble | |
| - d96_500m.solo.mtn_schar | |
| steps: | |
| - run: scancel -n $GITHUB_SHA | |
| - env: | |
| JOB: ${{ github.sha }}_${{ matrix.test }} | |
| run: scancel -n $JOB |