Script Command

[ppinchuk]

Allow user to run one or more scripts as part of a pipeline step. A little more generic than the example in #17 - this version can handle those python commands but also non-python commands on the terminal.

[codecov-commenter]

Codecov Report

Patch coverage: 84.37% and project coverage change: -0.17% ⚠️

Comparison is base (2a9247d) 98.21% compared to head (08f6a4b) 98.05%.
Report is 16 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #26      +/-   ##
==========================================
- Coverage   98.21%   98.05%   -0.17%     
==========================================
  Files          27       28       +1     
  Lines        2740     2771      +31     
  Branches      455      461       +6     
==========================================
+ Hits         2691     2717      +26     
- Misses         33       35       +2     
- Partials       16       19       +3     

Flag	Coverage Δ
unittests	98.05% <84.37%> (-0.17%)	⬇️

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Files Changed	Coverage Δ
gaps/cli/script.py	73.33% <73.33%> (ø)
gaps/cli/preprocessing.py	98.11% <80.00%> (-1.89%)	⬇️
gaps/cli/cli.py	100.00% <100.00%> (ø)
gaps/cli/documentation.py	100.00% <100.00%> (ø)

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