update readme and runscript

example_case_folders/10_heterogeneous_wind/README.md

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+# Example 10: Heterogeneous Wind
+
+## Description
+
+This example runs a wind farm level power tracking controller, using FLORIS as a simulation
+testbed, with heterogeneous inflow. The control algorithm is based on the A2e2g project. 
+This will the closed loop power tracking controller.
+
+
+## Running
+
+To run the example, execute the following command in the terminal:
+
+```bash
+bash run_script.sh
+```
+## Outputs
+
+To plot the outputs run the following command in the terminal:
+
+```bash
+python plot_outputs.py
+```

example_case_folders/10_heterogeneous_wind/run_script.sh

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+#!/bin/bash
+
+# Determine the base path for Conda initialization
+if [ -f "/home/$USER/anaconda3/etc/profile.d/conda.sh" ]; then
+    # Common path for Anaconda on Linux
+    CONDA_PATH="/home/$USER/anaconda3/etc/profile.d/conda.sh"
+elif [ -f "/Users/$USER/anaconda3/etc/profile.d/conda.sh" ]; then
+    # Common path for Anaconda on macOS
+    CONDA_PATH="/Users/$USER/anaconda3/etc/profile.d/conda.sh"
+elif [ -f "/opt/anaconda3/etc/profile.d/conda.sh" ]; then
+    # Alternative system-wide installation path
+    CONDA_PATH="/opt/anaconda3/etc/profile.d/conda.sh"
+elif [ -f "opt/miniconda3/etc/profile.d/conda.sh" ]; then
+    # Alternative system-wide installation path
+    CONDA_PATH="/opt/miniconda3/etc/profile.d/conda.sh"
+elif command -v conda &> /dev/null; then
+    # If conda is in PATH, use the which command to find conda location
+    CONDA_PATH=$(dirname "$(which conda)")/../etc/profile.d/conda.sh
+else
+    echo "Conda installation not found. Please ensure Conda is installed and in your PATH."
+    exit 1
+fi
+
+# Source the Conda initialization script
+source "$CONDA_PATH"
+conda activate hercules
+
+# Clean up existing outputs
+if [ -d outputs ]; then rm -r outputs; fi
+mkdir -p outputs
+
+# Set the helics port to use: 
+#make sure you use the same port number in the amr_input.inp and hercules_input_000.yaml files. 
+export HELICS_PORT=32000
+
+# Wait for the open-loop control simulation to finish and then run the closed-loop simulation
+helics_broker -t zmq  -f 2 --loglevel="debug" --local_port=$HELICS_PORT & 
+python3 hercules_runscript_CLcontrol.py hercules_input_000.yaml >> outputs/hercules.log 2>&1 &
+python3 floris_runscript.py inputs/amr_input.inp floris_standin_data.csv >> outputs/floris.log 2>&1
+
+# Clean up helics output if there
+# Search for a file that begins with the current year
+# And ends with csv
+# If the file exists, move to outputs folder
+current_year=$(date +"%Y")
+for file in ${current_year}*.csv; do
+    if [ -f "$file" ]; then
+        mv "$file" outputs/
+    fi
+done
+
+# If everything is successful
+echo "Finished running hercules"
+exit 0