Add attention_bias argument in transformer block and transformer layer modules, addressing change in MCore

[yaoyu-33]

What does this PR do ?

https://gitlab-master.nvidia.com/ADLR/megatron-lm/-/merge_requests/2293
we need to fix all occurances in NeMo where TransformerBlock is using a non-mcore TransformerLayer. Otherwise the forward interface between Block and Layer will not match anymore and so NeMo will break

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[github-actions]

beep boop 🤖: 🚨 The following files must be fixed before merge!

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Your code was analyzed with PyLint. The following annotations have been identified:

************* Module nemo.collections.vlm.mllama.model.vision
nemo/collections/vlm/mllama/model/vision.py:621:0: C0301: Line too long (135/119) (line-too-long)
nemo/collections/vlm/mllama/model/vision.py:61:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:115:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:139:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:167:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:318:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:326:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/vlm/mllama/model/vision.py:342:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:398:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/vlm/mllama/model/vision.py:417:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:488:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/vlm/mllama/model/vision.py:559:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:570:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/vlm/mllama/model/vision.py:581:4: C0116: Missing function or method docstring (missing-function-docstring)

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Your code has been rated at 9.47/10

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Thank you for improving NeMo's documentation!

[github-actions]

beep boop 🤖: 🙏 The following files have warnings. In case you are familiar with these, please try helping us to improve the code base.

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Your code was analyzed with PyLint. The following annotations have been identified:

************* Module nemo.collections.nlp.models.language_modeling.megatron.bert.bert_model
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:82:0: C0301: Line too long (121/119) (line-too-long)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:70:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:128:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:144:0: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:177:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:184:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:202:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:296:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:306:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:335:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/bert/bert_model.py:570:4: C0116: Missing function or method docstring (missing-function-docstring)
************* Module nemo.collections.nlp.models.language_modeling.megatron.falcon.falcon_decoder_layer
nemo/collections/nlp/models/language_modeling/megatron/falcon/falcon_decoder_layer.py:70:0: C0301: Line too long (149/119) (line-too-long)
nemo/collections/nlp/models/language_modeling/megatron/falcon/falcon_decoder_layer.py:102:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/falcon/falcon_decoder_layer.py:18:4: W0611: Unused parallel_state imported from megatron.core (unused-import)
nemo/collections/nlp/models/language_modeling/megatron/falcon/falcon_decoder_layer.py:19:4: W0611: Unused ShardedObject imported from megatron.core.dist_checkpointing.mapping (unused-import)
nemo/collections/nlp/models/language_modeling/megatron/falcon/falcon_decoder_layer.py:19:4: W0611: Unused ShardedTensor imported from megatron.core.dist_checkpointing.mapping (unused-import)
************* Module nemo.collections.nlp.models.language_modeling.megatron.gpt_full_te_layer_autocast_spec
nemo/collections/nlp/models/language_modeling/megatron/gpt_full_te_layer_autocast_spec.py:51:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/gpt_full_te_layer_autocast_spec.py:147:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/gpt_full_te_layer_autocast_spec.py:179:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/models/language_modeling/megatron/gpt_full_te_layer_autocast_spec.py:303:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/models/language_modeling/megatron/gpt_full_te_layer_autocast_spec.py:336:0: C0116: Missing function or method docstring (missing-function-docstring)
************* Module nemo.collections.nlp.modules.common.megatron.adapters.mcore_mixins
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:141:0: C0301: Line too long (120/119) (line-too-long)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:143:0: C0301: Line too long (147/119) (line-too-long)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:60:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:69:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:76:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:109:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:227:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:327:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:353:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:437:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:444:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:468:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:475:4: C0116: Missing function or method docstring (missing-function-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:493:0: C0115: Missing class docstring (missing-class-docstring)
nemo/collections/nlp/modules/common/megatron/adapters/mcore_mixins.py:500:4: C0116: Missing function or method docstring (missing-function-docstring)

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Your code has been rated at 9.42/10

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Thank you for improving NeMo's documentation!