BraTS21

Challange structure

Moved to here

Depending on your environment create env (conda env create --file <file name>):
- For cpu: env_cpu.yml
- For gpu: env_gpu.yml.
Install nnUNet from here.
- Clone repo
- pip install -e . in nnUNet repo
- python setup.py install in nnUNet repo

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
brats21		brats21
EDA.ipynb		EDA.ipynb
ET_DecisionTree.ipynb		ET_DecisionTree.ipynb
ET_DecisionTree_new_thresholds.ipynb		ET_DecisionTree_new_thresholds.ipynb
README.md		README.md
env_cpu.yml		env_cpu.yml
env_gpu.yml		env_gpu.yml
model_evaluation.ipynb		model_evaluation.ipynb
nnunet.ipynb		nnunet.ipynb
performance_evaluation.ipynb		performance_evaluation.ipynb
run_model.ipynb		run_model.ipynb
setup.py		setup.py
synapse_scraper.ipynb		synapse_scraper.ipynb
tune_softmax.ipynb		tune_softmax.ipynb