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21 Open 32 Closed
21 Open 32 Closed
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Issues list

cell typing - next round of guidance documentation Improvements or additions to documentation priority
#122 opened Nov 4, 2024 by patrickjdanaher
1
Profile matrices comparison enhancement New feature or request
#121 opened Nov 4, 2024 by eveilyeverafter
UMAP parameterization in CosMx SMI data
#120 opened Nov 4, 2024 by eveilyeverafter
need cell labels in spatial plot
#119 opened Nov 4, 2024 by musikutiv
2
spatial algorithms zoo - additions
#99 opened Aug 20, 2024 by patrickjdanaher
5 tasks
1
DE paper
#95 opened Aug 7, 2024 by patrickjdanaher
@dan11mcguire
2
multi-sample analyses - strategies writeup needed
#93 opened Aug 5, 2024 by patrickjdanaher
batch effects - analysis strategies writeup needed
#92 opened Aug 5, 2024 by patrickjdanaher
1
AtoMx custom modules: links / commentary / basics
#82 opened Jul 11, 2024 by patrickjdanaher
how to incorporate AtoMx into open-source analysis workflows writeup needed
#76 opened Jun 27, 2024 by patrickjdanaher
1
basic analysis vignette - add DE
#71 opened Jun 19, 2024 by patrickjdanaher
Update to make-composite.py script enhancement New feature or request
#68 opened Jun 18, 2024 by eveilyeverafter
@eveilyeverafter
lit review of good methods papers writeup needed
#51 opened Jun 4, 2024 by patrickjdanaher
Creating napari-ready files programmatically napari series
#40 opened May 23, 2024 by eveilyeverafter
@eveilyeverafter
Blog post with napari ROI selection napari series
#37 opened May 23, 2024 by eveilyeverafter
@eveilyeverafter
2
topic: advanced cell typing priority writeup needed
#30 opened May 14, 2024 by patrickjdanaher
2
needed: quick post on what to do with negprobes
#28 opened May 8, 2024 by patrickjdanaher
1
add viz layout to fov rearranging tools
#15 opened Mar 29, 2024 by patrickjdanaher
Package of CosMx utilities
#14 opened Mar 19, 2024 by patrickjdanaher
point to documentation on raw data formats
#4 opened Jan 9, 2024 by patrickjdanaher
visualize the neighborhood of query cells in gallery view
#2 opened Jan 9, 2024 by lidanwu
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