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Fix/configs update #5179

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Run time

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Job	Run time
pre-commit	17s
core / R 4.4.1 on ubuntu-20.04	24m 48s
core / Python 3.6 on ubuntu-20.04	24m 49s
core / Python 3.7 on ubuntu-20.04	1m 46s
core / Python 3.8 on ubuntu-20.04	1m 46s
core / Python 3.9 on ubuntu-20.04	1m 56s
core / Python 3.10 on ubuntu-20.04	1m 43s
core / Python 3.11 on ubuntu-20.04	1m 35s
core / Python 3.12 on ubuntu-20.04	1m 56s
core / Python 3.13 on ubuntu-20.04	2m 4s
core / Python 3.13 on macos-latest	2m 4s
core / Python 3.12 on macos-latest	2m 1s
core / Python 3.11 on macos-latest	2m 59s
core / Python 3.10 on macos-latest	2m 0s
	1h 11m 44s