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Update QuantifierInput.rst
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sharoncy authored Jan 7, 2025
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Expand Up @@ -65,7 +65,7 @@ The aim is to downscale the images as much as possible but without losing inform

`Ilastik: <http://ilastik.org/download.html>`_ We recommend the Pixel and Object Classification workflows in the ilastik software to generate the segmentations, with the Glasbey lookup table applied with FIJI to visualise the output. See `here <https://quint-workflow.readthedocs.io/en/latest/Ilastik.html>`_ for instructions.

`QuPath: <https://qupath.github.io/QuPath>`_ is an alternative that can be used to generate the segmentations. In some cases QuPath may perform better than ilastik.
`QuPath: <https://qupath.github.io/>`_ is an alternative that can be used to generate the segmentations. In some cases QuPath may perform better than ilastik.

`FIJI ImageJ: <https://imagej.net/software/fiji/>`_ Fiji is also useful for generating segmentations.

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