Update Technical.rst

docs/Technical.rst

@@ -26,30 +26,40 @@ Download as a zip archive file, save on the C:drive of your computer, extracted
 
 **Acknowledgements**: Nutil was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).
 
-**Citation of the tool**
+**Citation of Nutil**
+~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 * **Nutil:** Groeneboom NE, Yates SC, Puchades MA and Bjaalie JG (2020) Nutil: A Pre- and Postprocessing Toolbox for Histological Rodent Brain Section Images. Front. Neuroinform. 14:37. https://doi.org/10.3389/fninf.2020.00037
 
 * **QUINT workflow:** Yates SC, Groeneboom NE, Coello C, Lichtenthaler SF, Kuhn P-H, Demuth H-U, HartlageRübsamen M, Roßner S, Leergaard T, Kreshuk A, Puchades MA and Bjaalie JG (2019) QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Front. Neuroinform. 13:75. https://doi.org/10.3389/fninf.2019.00075.
 
-**Citation of the reference atlases used in the tool**
+**Citation of the reference atlases used in Nutil**
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-* **Allen Mouse Brain Atlas Common Coordinate Framework version 3**: Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. See the Allen institute `citation policy <https://alleninstitute.org/citation-policy/>`_.
+**Allen Mouse Brain Atlas Common Coordinate Framework version 3** 
 
-* **Waxholm Space atlas of the Sprague Dawley rat brain:** Please refer to the atlas using RRID:SCR_017124, specify the atlas version(s) used, and cite the most recent publication (see the `citation policy. <https://www.nitrc.org/citation/?group_id=1081>`_). If your work makes use of previous atlas versions, or brain region descriptions detailed in earlier publications, please also cite the corresponding publication.
+Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. See the Allen institute `citation policy <https://alleninstitute.org/citation-policy/>`_.
+
+**Waxholm Space atlas of the Sprague Dawley rat brain:** 
+
+Please refer to the atlas using RRID:SCR_017124, specify the atlas version(s) used, and cite the most recent publication (see the `citation policy. <https://www.nitrc.org/citation/?group_id=1081>`_). If your work makes use of previous atlas versions, or brain region descriptions detailed in earlier publications, please also cite the corresponding publication.
   * WHS version 4: Kleven et al. (2023) Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration. Nat Methods.
   * WHS version 3: Osen etl al. (2019) Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. NeuroImage 199, 38-56. 
   * WHS version 2: Kjonigsen et al. (2015) Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging. NeuroImage 108, 441-449. 
   * WHS version 1: Papp et al. (2014) Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage 97, 374-386.
 
-* **Kim Unified Adult Mouse Brain Atlas**: * Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell.
+**Kim Unified Adult Mouse Brain Atlas** 
+
+* Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell.
+
+**Developmental Mouse Brain Atlas**. 
 
-* **Developmental Mouse Brain Atlas**. We encourage researchers who use DeMBA to cite both the dataset and publication presenting DeMBA, and to specify the age of any template(s) used and the version of any segmentation(s) used.
+We encourage researchers who use DeMBA to cite both the dataset and publication presenting DeMBA, and to specify the age of any template(s) used and the version of any segmentation(s) used.
 
-  * Article: Carey et al. (2024) DeMBA: a developmental atlas for navigating the mouse brain in space and time. bioRxiv. https://doi.org/10.1101/2024.06.14.598876
-  * Dataset: Carey et al. (2024). Developmental mouse brain atlas (DeMBA) with continuous coverage of postnatal day 4 to 56 (v1) [Data set]. EBRAINS. https://doi.org/10.25493/PWDG-536
-  * Allen CCFv3 segmentations: Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. https://doi.org/10.1016/j.cell.2020.04.007 
-  * KimLabDev segmentations: Kronman et al. (2024). Developmental mouse brain common coordinate framework. Nature Communications. https://doi.org/10.1038/s41467-024-53254-w
+* Article: Carey et al. (2024) DeMBA: a developmental atlas for navigating the mouse brain in space and time. bioRxiv. https://doi.org/10.1101/2024.06.14.598876
+* Dataset: Carey et al. (2024). Developmental mouse brain atlas (DeMBA) with continuous coverage of postnatal day 4 to 56 (v1) [Data set]. EBRAINS. https://doi.org/10.25493/PWDG-536
+* Allen CCFv3 segmentations: Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. https://doi.org/10.1016/j.cell.2020.04.007 
+* KimLabDev segmentations: Kronman et al. (2024). Developmental mouse brain common coordinate framework. Nature Communications. https://doi.org/10.1038/s41467-024-53254-w