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Fix kernels and statistics (instantaneous_rate & mean_firing_rate) #313

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merged 23 commits into from
May 11, 2020
Merged

Fix kernels and statistics (instantaneous_rate & mean_firing_rate) #313

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cf85165
removed magic in boundary_enclosing_area_fraction
dizcza Apr 14, 2020
ccc4427
removed _sigma_scaled
dizcza Apr 15, 2020
aa42ca3
refactored AlphaKernel.evaluate()
dizcza Apr 15, 2020
1cc0921
standardized quantities handling in kernels _evaluate()
dizcza Apr 17, 2020
5fa23d7
fixed kernels.median_index() and statistics.instantaneous_rate()
dizcza Apr 20, 2020
e0eddb4
revised statistics module
dizcza Apr 21, 2020
495d918
kernels 2 more tests: element-wise only & pdf range
dizcza Apr 21, 2020
2fa3c3a
pep8
dizcza Apr 21, 2020
bca2ab8
python2 issues
dizcza Apr 21, 2020
293e868
plot kernels in the doc
dizcza Apr 22, 2020
1fd3f33
statistics docs
dizcza Apr 23, 2020
3ce5e9b
added matplotlib in requirements-docs.txt because kernels module doc …
dizcza Apr 23, 2020
0c210ba
Merge branch 'master' into fix/kernels
dizcza Apr 23, 2020
d195e70
instantaneous_rate back to float64
dizcza Apr 27, 2020
917fb69
added test_spikes_on_edges & test_trim_as_convolve_mode
dizcza May 4, 2020
b86797c
fixed tests
dizcza May 5, 2020
dfd636b
CDF, ICDF, median index
dizcza May 8, 2020
7113645
center_kernel feature
dizcza May 8, 2020
8b1e79c
fixed tests
dizcza May 8, 2020
a73641e
python2
dizcza May 8, 2020
be183c3
regression test
dizcza May 11, 2020
ef34d2d
added comments to describe fft_mode choice in the instantaneous_rate(…
dizcza May 11, 2020
9bb8798
sphinx 3.0: set autosummary_generate_overwrite to False
dizcza May 11, 2020
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25 changes: 24 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.AlphaKernel.rst
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Expand Up @@ -4,4 +4,27 @@ elephant.kernels.AlphaKernel
.. currentmodule:: elephant.kernels

.. autoclass:: AlphaKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~AlphaKernel.__call__
~AlphaKernel.boundary_enclosing_area_fraction
~AlphaKernel.is_symmetric
~AlphaKernel.median_index





.. rubric:: Attributes

.. autosummary::

~AlphaKernel.min_cutoff


25 changes: 24 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.EpanechnikovLikeKernel.rst
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Expand Up @@ -4,4 +4,27 @@ elephant.kernels.EpanechnikovLikeKernel
.. currentmodule:: elephant.kernels

.. autoclass:: EpanechnikovLikeKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~EpanechnikovLikeKernel.__call__
~EpanechnikovLikeKernel.boundary_enclosing_area_fraction
~EpanechnikovLikeKernel.is_symmetric
~EpanechnikovLikeKernel.median_index





.. rubric:: Attributes

.. autosummary::

~EpanechnikovLikeKernel.min_cutoff


25 changes: 24 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.ExponentialKernel.rst
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Expand Up @@ -4,4 +4,27 @@ elephant.kernels.ExponentialKernel
.. currentmodule:: elephant.kernels

.. autoclass:: ExponentialKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~ExponentialKernel.__call__
~ExponentialKernel.boundary_enclosing_area_fraction
~ExponentialKernel.is_symmetric
~ExponentialKernel.median_index





.. rubric:: Attributes

.. autosummary::

~ExponentialKernel.min_cutoff


24 changes: 23 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.GaussianKernel.rst
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Expand Up @@ -4,5 +4,27 @@ elephant.kernels.GaussianKernel
.. currentmodule:: elephant.kernels

.. autoclass:: GaussianKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~GaussianKernel.__call__
~GaussianKernel.boundary_enclosing_area_fraction
~GaussianKernel.is_symmetric
~GaussianKernel.median_index





.. rubric:: Attributes

.. autosummary::

~GaussianKernel.min_cutoff


8 changes: 0 additions & 8 deletions doc/reference/toctree/kernels/elephant.kernels.Kernel.rst
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25 changes: 24 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.LaplacianKernel.rst
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Expand Up @@ -4,4 +4,27 @@ elephant.kernels.LaplacianKernel
.. currentmodule:: elephant.kernels

.. autoclass:: LaplacianKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~LaplacianKernel.__call__
~LaplacianKernel.boundary_enclosing_area_fraction
~LaplacianKernel.is_symmetric
~LaplacianKernel.median_index





.. rubric:: Attributes

.. autosummary::

~LaplacianKernel.min_cutoff


24 changes: 23 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.RectangularKernel.rst
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Expand Up @@ -4,5 +4,27 @@ elephant.kernels.RectangularKernel
.. currentmodule:: elephant.kernels

.. autoclass:: RectangularKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~RectangularKernel.__call__
~RectangularKernel.boundary_enclosing_area_fraction
~RectangularKernel.is_symmetric
~RectangularKernel.median_index





.. rubric:: Attributes

.. autosummary::

~RectangularKernel.min_cutoff


8 changes: 0 additions & 8 deletions doc/reference/toctree/kernels/elephant.kernels.SymmetricKernel.rst
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24 changes: 23 additions & 1 deletion doc/reference/toctree/kernels/elephant.kernels.TriangularKernel.rst
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Expand Up @@ -4,5 +4,27 @@ elephant.kernels.TriangularKernel
.. currentmodule:: elephant.kernels

.. autoclass:: TriangularKernel
:members: __call__, is_symmetric, boundary_enclosing_area_fraction, min_cutoff
:members:
:inherited-members:


.. rubric:: Methods

.. autosummary::

~TriangularKernel.__call__
~TriangularKernel.boundary_enclosing_area_fraction
~TriangularKernel.is_symmetric
~TriangularKernel.median_index





.. rubric:: Attributes

.. autosummary::

~TriangularKernel.min_cutoff


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