[ENH] Integrate trials object with GPFA#610

Merged

Moritz-Alexander-Kern merged 56 commits intoNeuralEnsemble:masterfrom INM-6:feature/trials_gpfa

Mar 26, 2024

+427-160

Commits on Dec 8, 2023

add trial class to docstrings
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add first input checks for Trials object
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fix input checks
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add trial handling to GPFA.fit() method
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add trial handling to transform method
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add docstring to GPFA.score
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add notebook for testing
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update test notebook
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Commits on Dec 14, 2023

fix pep8
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Commits on Jan 24, 2024

use setupclass for faster unittests
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optimize imports for GPFA unitests
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remove python 2 support
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use f-strings for error messages
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implement trial handling for fit and transform, and add unittests
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fix input checks, added test
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update docstrings
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fix bug related to scipy
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fix type annotation
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change type annotation
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update typing
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fix imports
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fix imports
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add type annotations to fit_transform and score
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Commits on Feb 7, 2024

update tutorial
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format gpfa.py with black
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Commits on Feb 13, 2024

reordered functions
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fix typos
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undo fix for scipy
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Commits on Feb 21, 2024

fix pep8
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add decorators to handle trial object
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remove type check
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add doctring for decorator
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add functions for spiketrains
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formatting
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Commits on Feb 28, 2024

Fix docstring formatting
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add condition for no spiketrains
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Commits on Mar 18, 2024

change import of sklearn for tests
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fix pep8
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Commits on Mar 20, 2024

remove logic from decorator
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add type annotations to fit method
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add type annotations to transform method
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update tutorial
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pep8 formatting
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Commits on Mar 21, 2024

remove development notebook
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Commits on Mar 25, 2024

add decorator to score and fit_transform
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make decorator iterate over args and kwargs an replace relevant item
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Merge branch 'master' into feature/trials_gpfa
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add unit tests for new decorator
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fix unittest
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use variable n_trials instead of hard-coding this number
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Commits on Mar 26, 2024

update comments
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remove self argument from decorator
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fix docstring for decorator
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fix pep8
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fix typo in example for decorator
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fix coverage report
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