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| Original file line number | Diff line number | Diff line change |
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| # For most projects, this workflow file will not need changing; you simply need | ||
| # to commit it to your repository. | ||
| # | ||
| # You may wish to alter this file to override the set of languages analyzed, | ||
| # or to provide custom queries or build logic. | ||
| # | ||
| # ******** NOTE ******** | ||
| # We have attempted to detect the languages in your repository. Please check | ||
| # the `language` matrix defined below to confirm you have the correct set of | ||
| # supported CodeQL languages. | ||
| # | ||
| name: "CodeQL" | ||
|
|
||
| on: | ||
| push: | ||
| branches: [ dev, main ] | ||
| pull_request: | ||
| # The branches below must be a subset of the branches above | ||
| branches: [ dev ] | ||
| schedule: | ||
| - cron: '18 1 * * 0' | ||
|
|
||
| jobs: | ||
| analyze: | ||
| name: Analyze | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| actions: read | ||
| contents: read | ||
| security-events: write | ||
|
|
||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| language: [ 'cpp', 'python' ] | ||
| # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ] | ||
| # Learn more about CodeQL language support at https://git.io/codeql-language-support | ||
|
|
||
| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v2 | ||
|
|
||
| # Initializes the CodeQL tools for scanning. | ||
| - name: Initialize CodeQL | ||
| uses: github/codeql-action/init@v1 | ||
| with: | ||
| languages: ${{ matrix.language }} | ||
| # If you wish to specify custom queries, you can do so here or in a config file. | ||
| # By default, queries listed here will override any specified in a config file. | ||
| # Prefix the list here with "+" to use these queries and those in the config file. | ||
| # queries: ./path/to/local/query, your-org/your-repo/queries@main | ||
|
|
||
| # Autobuild attempts to build any compiled languages (C/C++, C#, or Java). | ||
| # If this step fails, then you should remove it and run the build manually (see below) | ||
| # - name: Autobuild | ||
| # uses: github/codeql-action/autobuild@v1 | ||
|
|
||
| # ℹ️ Command-line programs to run using the OS shell. | ||
| # 📚 https://git.io/JvXDl | ||
|
|
||
| # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines | ||
| # and modify them (or add more) to build your code if your project | ||
| # uses a compiled language | ||
|
|
||
| - name: Build | ||
| run: | | ||
| python -m pip install -r requirements-dev.txt | ||
| BUILD_MONAI=1 ./runtests.sh --build | ||
| - name: Perform CodeQL Analysis | ||
| uses: github/codeql-action/analyze@v1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,57 @@ | ||
| name: conda | ||
|
|
||
| on: | ||
| schedule: | ||
| - cron: "0 3 * * *" # at 03:00 UTC | ||
| # Allows you to run this workflow manually from the Actions tab | ||
| workflow_dispatch: | ||
|
|
||
| concurrency: | ||
| # automatically cancel the previously triggered workflows when there's a newer version | ||
| group: conda-tests-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| jobs: | ||
| cron-conda: | ||
| if: github.repository == 'Project-MONAI/MONAI' | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [windows-latest, macOS-latest, ubuntu-latest] | ||
| python-version: ["3.7"] | ||
| runs-on: ${{ matrix.os }} | ||
| env: | ||
| QUICKTEST: True | ||
| steps: | ||
| - if: runner.os == 'windows' | ||
| name: Config pagefile (Windows only) | ||
| uses: al-cheb/configure-pagefile-action@v1.2 | ||
| with: | ||
| minimum-size: 8 | ||
| maximum-size: 16 | ||
| disk-root: "D:" | ||
| - uses: actions/checkout@v2 | ||
| - uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| auto-update-conda: true | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install env (CPU ${{ runner.os }}) | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda info | ||
| conda list | ||
| conda env create --file environment-dev.yml | ||
| - if: runner.os == 'windows' | ||
| name: Windows only install | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda activate monai | ||
| # this `cpuonly` and -c conda-forge is needed to reduce the paging file size on a github instance | ||
| conda install pytorch torchvision torchaudio cpuonly -c pytorch -c conda-forge | ||
| conda deactivate | ||
| - name: Test env(CPU ${{ runner.os }}) | ||
| shell: bash -l {0} | ||
| run: | | ||
| conda activate monai | ||
| $(pwd)/runtests.sh --build --unittests | ||
| conda deactivate |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,42 @@ | ||
| name: cron-mmar | ||
|
|
||
| on: | ||
| schedule: | ||
| - cron: "0 2 * * *" # at 02:00 UTC | ||
| # Allows you to run this workflow manually from the Actions tab | ||
| workflow_dispatch: | ||
|
|
||
| concurrency: | ||
| # automatically cancel the previously triggered workflows when there's a newer version | ||
| group: mmar-tests-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| jobs: | ||
| cron-load: | ||
| if: github.repository == 'Project-MONAI/MONAI' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Python 3.8 | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: cache weekly timestamp | ||
| id: pip-cache | ||
| run: echo "::set-output name=datew::$(date '+%Y-%V')" | ||
| - name: cache for pip | ||
| uses: actions/cache@v2 | ||
| id: cache | ||
| with: | ||
| path: ~/.cache/pip | ||
| key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip wheel | ||
| python -m pip install -r requirements-dev.txt | ||
| - name: Loading MMARs | ||
| run: | | ||
| # clean up temporary files | ||
| $(pwd)/runtests.sh --build --clean | ||
| # run tests | ||
| python -m tests.ngc_mmar_loading |
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