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Releases: NicolasH2/gggsea

Version 0.1.0

04 Apr 12:19
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Creates GSEA plots in ggplot2.
Comes with several functions. The most important ones:

  • gseaCurve is at the center of the package. Given a ranked list and a list of gene signatures, it provides a data.frame ready for plotting
  • geom_gsea is the main visualization function, using the output from gseaCurve to generate a GSEA plot
  • theme_gsea changes the ggplot layout so that it looks good for a GSEA plot

Side-functions for special use:

  • geom_gseaLine plots only the line
  • geom_gseaGradient plots only the color gradient
  • geom_gseaTicks plots only the ticks/hits of the ranked list in the gene signature