NixOS · FRidh · Sep 1, 2018 · Aug 30, 2018 · Aug 30, 2018 · Aug 30, 2018
diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix
@@ -62,6 +62,14 @@ let
         # No tests included
         doCheck = false;
       };
+
+      pylru = super.pylru.overridePythonAttrs (oldAttrs: rec {
+        version = "1.0.9";
+        src = oldAttrs.src.override {
+          inherit version;
+          sha256 = "71376192671f0ad1690b2a7427d39a29b1df994c8469a9b46b03ed7e28c0172c";
+        };
+      });
     };
   };
 

diff --git a/pkgs/development/python-modules/XlsxWriter/default.nix b/pkgs/development/python-modules/XlsxWriter/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "XlsxWriter";
-  version = "1.0.7";
+  version = "1.0.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1224b971c174f33b954f9a1906679d0049399bd6a5a8c78bbae2d6c2c4facebd";
+    sha256 = "98a94b32d4929d3e34595b4654b8e7f951182f540056b9cb734c88899912f729";
   };
 
   meta = {

diff --git a/pkgs/development/python-modules/absl-py/default.nix b/pkgs/development/python-modules/absl-py/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "932e6acb1a57bdcfb784a1ce6ad46a2f50b89d355a5619ed6df60db1414173d2";
+    sha256 = "1e6e70506fb4d867cf269af7bcc27b744c36bbc4c516f0f8ccf2039956deea72";
   };
 
   propagatedBuildInputs = [ six ];

diff --git a/pkgs/development/python-modules/aws-adfs/default.nix b/pkgs/development/python-modules/aws-adfs/default.nix
@@ -2,12 +2,12 @@
 , pytest, pytestrunner, pytestcov, mock, glibcLocales, lxml, boto3, requests, click, configparser }:
 
 buildPythonPackage rec {
-  version = "0.12.0";
+  version = "0.12.1";
   pname = "aws-adfs";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1cjrm61k6905dmhgrqyc5caxx5hbhj3sr6cx4r6sbdyz453i7pc6";
+    sha256 = "72725d7005252b96ccfa9719fe4beec2b86301bff894d4d97a50fc1d05393fd8";
   };
 
   # Relax version constraint

diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname =  "boto3";
-  version = "1.7.57";
+  version = "1.7.84";
 
   src = fetchFromGitHub {
     owner = "boto";
     repo  = "boto3";
     rev   = version;
-    sha256 = "0rp3vclx7mvfl6isa47m7dzlrf33qb9vj53p0gj4cw3mgl14cnbl";
+    sha256 = "0d9kqjqmnn53p1xpmdbbjxcxv2482yx3vjhxw8izp0mpq58i5c14";
   };
 
   propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];

diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix
@@ -7,16 +7,15 @@
 , simplejson
 , mock
 , nose
-, urllib3
 }:
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.11.1";
+  version = "1.10.84";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5b2d2393c02a082d605dac13c1322c3c553a4d4cf23de7b48268ae7f4a105eb3";
+    sha256 = "d3e4b5a2c903ea30d19d41ea2f65d0e51dce54f4f4c4dfd6ecd7b04f240844a8";
   };
 
   propagatedBuildInputs = [
@@ -25,7 +24,6 @@ buildPythonPackage rec {
     docutils
     ordereddict
     simplejson
-    urllib3
   ];
 
   checkInputs = [ mock nose ];

diff --git a/pkgs/development/python-modules/bottleneck/default.nix b/pkgs/development/python-modules/bottleneck/default.nix
@@ -1,6 +1,7 @@
 { buildPythonPackage
 , fetchPypi
 , nose
+, pytest
 , numpy
 , python
 }:
@@ -15,10 +16,10 @@ buildPythonPackage rec {
     sha256 = "6efcde5f830aed64feafca0359b51db0e184c72af8ba6675b4a99f263922eb36";
   };
 
-  checkInputs = [ nose ];
+  checkInputs = [ pytest nose ];
   propagatedBuildInputs = [ numpy ];
   checkPhase = ''
-    nosetests -v $out/${python.sitePackages}
+    py.test -p no:warnings $out/${python.sitePackages}
   '';
   postPatch = ''
     substituteInPlace setup.py --replace "__builtins__.__NUMPY_SETUP__ = False" ""

diff --git a/pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch b/pkgs/development/python-modules/cairocffi/cairocffi-0.8.1-cairo-1.15.12.patch
diff --git a/pkgs/development/python-modules/cairocffi/default.nix b/pkgs/development/python-modules/cairocffi/default.nix
@@ -49,7 +49,6 @@ buildPythonPackage rec {
       gdk_pixbuf = gdk_pixbuf.out;
     })
     ./fix_test_scaled_font.patch
-    ./cairocffi-0.8.1-cairo-1.15.12.patch
   ];
 
   meta = with lib; {

diff --git a/pkgs/development/python-modules/celery/default.nix b/pkgs/development/python-modules/celery/default.nix
@@ -38,7 +38,7 @@ in buildPythonPackage rec {
     unset NIX_REDIRECTS LD_PRELOAD
   '';
 
-  buildInputs = [ pytest case ];
+  checkInputs = [ pytest_32 case ];
   propagatedBuildInputs = [ kombu billiard pytz anyjson amqp eventlet ];
 
   meta = with stdenv.lib; {

diff --git a/pkgs/development/python-modules/cement/default.nix b/pkgs/development/python-modules/cement/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi }:
+{ stdenv, buildPythonPackage, fetchPypi, isPy3k }:
 
 buildPythonPackage rec {
   pname = "cement";
@@ -13,6 +13,8 @@ buildPythonPackage rec {
   # 127.0.0.1:11211.
   doCheck = false;
 
+  disabled = !isPy3k;
+
   meta = with stdenv.lib; {
     homepage = http://builtoncement.com/;
     description = "A CLI Application Framework for Python.";

diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchPypi, buildPythonPackage, pythonOlder, isPy3k
 , pyperclip, six, pyparsing, vim, wcwidth, colorama
-, contextlib2 ? null
+, contextlib2 ? null, setuptools_scm
 , pytest, mock, which, glibcLocales
 }:
 buildPythonPackage rec {
@@ -31,6 +31,10 @@ buildPythonPackage rec {
   doCheck = !stdenv.isDarwin;
   disabled = !isPy3k;
 
+  buildInputs = [
+    setuptools_scm
+  ];
+
   propagatedBuildInputs = [
     colorama
     pyperclip

diff --git a/pkgs/development/python-modules/deform/default.nix b/pkgs/development/python-modules/deform/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "deform";
-  version = "2.0.5";
+  version = "2.0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "874d3346a02c500432efdcc73b1a7174aa0ea69cd52a99bb9a812967f54f6f79";
+    sha256 = "bda0b809c8a668e105e30650a6766103207eafdd12c313acd59274ccd2c4d297";
   };
 
   postPatch = ''

diff --git a/pkgs/development/python-modules/dftfit/default.nix b/pkgs/development/python-modules/dftfit/default.nix
@@ -21,12 +21,12 @@
 
 buildPythonPackage rec {
   pname = "dftfit";
-  version = "0.4.11";
+  version = "0.4.22";
   disabled = (!isPy3k);
 
   src = fetchPypi {
      inherit pname version;
-     sha256 = "c6e36a793f9f94746bb8a04fb8316404aeacfa918704de07b15e1b4b8b62242d";
+     sha256 = "06dbdc21cf9ed199bfceae5301172bee2164a3b9ef6f0814a089530c320ebb3a";
   };
 
   buildInputs = [ pytestrunner ];

diff --git a/pkgs/development/python-modules/faker/default.nix b/pkgs/development/python-modules/faker/default.nix
@@ -8,11 +8,11 @@ assert pythonOlder "3.3" -> ipaddress != null;
 
 buildPythonPackage rec {
   pname = "Faker";
-  version = "0.8.17";
+  version = "0.8.18";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0e9a1227a3a0f3297a485715e72ee6eb77081b17b629367042b586e38c03c867";
+    sha256 = "0184fa252f86214308bb6bed344f96294f2e3528fbffafc727890cf2a86d6027";
   };
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/folium/default.nix b/pkgs/development/python-modules/folium/default.nix
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     sha256 = "08681be47b1861221bc7cf17b6e368a8d734db81682d716c22a11e839f47cb79";
   };
 
-  checkInputs = [ pytest numpy nbconvert pandas mock ];
+  checkInputs = [ pytest nbconvert pandas mock ];
   propagatedBuildInputs = [ jinja2 branca six requests numpy ];
 
   # No tests in archive

diff --git a/pkgs/development/python-modules/h5py/default.nix b/pkgs/development/python-modules/h5py/default.nix
@@ -37,6 +37,9 @@ in buildPythonPackage rec {
   propagatedBuildInputs = [ numpy six]
     ++ optionals mpiSupport [ mpi4py openssh ];
 
+  # https://github.com/h5py/h5py/issues/1088
+  doCheck = false;
+
   meta = {
     description =
       "Pythonic interface to the HDF5 binary data format";

diff --git a/pkgs/development/python-modules/joblib/default.nix b/pkgs/development/python-modules/joblib/default.nix
@@ -9,10 +9,10 @@
 
 buildPythonPackage rec {
   pname = "joblib";
-  version = "0.12.2";
+  version = "0.12.3";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e9f04885cf11704669f3a731ea6ac00bbc7dea16137aa4394ef7c272cdb9d008";
+    sha256 = "333b9bf16ff015d6b56bf80b9831afdd243443cb84c7ff7b6e342f117e354c42";
   };
 
   checkInputs = [ sphinx numpydoc pytest ];

diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix
@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, isPy3k, fetchPypi, ipython_genutils, jupyterlab_launcher, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab";
-  version = "0.34.2";
+  version = "0.34.6";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "37f66118b35c11fd51f0680e665139d62f86fe54f1e30d2517a1eabb30616ce4";
+    sha256 = "d6e5a3855a0d55e6aa4ab704379da5da3db2e652442e79acfa2e9d14ef50ccb3";
   };
 
   propagatedBuildInputs = [

diff --git a/pkgs/development/python-modules/keyrings-alt/default.nix b/pkgs/development/python-modules/keyrings-alt/default.nix
@@ -11,12 +11,15 @@ buildPythonPackage rec {
     sha256 = "0nnva8g03dv6gdhjk1ihn2qw7g15232fyj8shipah9whgfv8d75m";
   };
 
+  postPatch = ''
+    substituteInPlace pytest.ini \
+      --replace "--flake8" ""
+  '';
+
   nativeBuildInputs = [ setuptools_scm ];
   propagatedBuildInputs = [ six ];
 
-  # Fails with "ImportError: cannot import name mock"
-  #doCheck = false;
-  checkInputs = [ pytest pytest-flake8 keyring ] ++ stdenv.lib.optional (pythonOlder "3.3") backports_unittest-mock;
+  checkInputs = [ pytest keyring ] ++ stdenv.lib.optional (pythonOlder "3.3") backports_unittest-mock;
 
   checkPhase = ''
     py.test

diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix
@@ -1,14 +1,14 @@
 { buildPythonPackage, fetchPypi, jinja2, werkzeug, flask
 , requests, pytz, backports_tempfile, cookies, jsondiff, botocore, aws-xray-sdk, docker, responses
-, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil, mock, pyaml }:
+, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil, mock, pyaml, python-jose }:
 
 buildPythonPackage rec {
   pname = "moto";
-  version = "1.3.4";
+  version = "1.3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7c86d1c3bd6362954afaded735354c11afd22037eb6736152f057a1bff0c8868";
+    sha256 = "52426f2567e51ba73fdc7c7d617236b7e7918dca2421caabe13e5290942b53d8";
   };
 
   postPatch = ''
@@ -42,6 +42,7 @@ buildPythonPackage rec {
     botocore
     docker
     responses
+    python-jose
   ];
 
   checkInputs = [ boto3 nose sure freezegun ];

diff --git a/pkgs/development/python-modules/natsort/default.nix b/pkgs/development/python-modules/natsort/default.nix
@@ -4,8 +4,6 @@
 , fetchPypi
 , hypothesis
 , pytestcache
-, pytestflakes
-, pytestpep8
 , pytest
 , glibcLocales
 , mock ? null
@@ -19,8 +17,6 @@ buildPythonPackage rec {
   checkInputs = [
     hypothesis
     pytestcache
-    pytestflakes
-    pytestpep8
     pytest
     glibcLocales
   ]
@@ -37,7 +33,7 @@ buildPythonPackage rec {
   # testing based on project's tox.ini
   checkPhase = ''
     pytest --doctest-modules natsort
-    pytest --flakes --pep8
+    pytest
   '';
 
   meta = {

diff --git a/pkgs/development/python-modules/openpyxl/default.nix b/pkgs/development/python-modules/openpyxl/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "openpyxl";
-  version = "2.5.5";
+  version = "2.5.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f391b0035d7c98f25aad539726e8efc77eea250ff1a120ea7d264c03a16f5fe";
+    sha256 = "04091e034911a0afc531c3a15e5ae0b1b6a43654dbf63c187f47d20cdfefac1c";
   };
 
   checkInputs = [ pytest ];

diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
@@ -80,6 +80,8 @@ in buildPythonPackage rec {
     "test_oo_optimizable"
     # Disable IO related tests because IO data is no longer distributed
     "io"
+    # KeyError Timestamp
+    "test_to_excel"
   ] ++ optionals isDarwin [
     "test_locale"
     "test_clipboard"

diff --git a/pkgs/development/python-modules/persistent/default.nix b/pkgs/development/python-modules/persistent/default.nix
@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "persistent";
-  version = "4.4.1";
+  version = "4.4.2";
 
   propagatedBuildInputs = [ zope_interface ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2aedeaaf09fed52f63324b178d0addfe1c558340d68d04aafe85abafaafd8699";
+    sha256 = "451c756b4f4faa5f06f87d57f5928758bb3a16a586ceaa8773c35367188eddf9";
   };
 
   meta = {