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Neural network for protein folding. Receives as input a nanobody sequence and outputs a 3D structure prediction for it.

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NoamBenSason/Protein-Folding

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Protein-Folding

Files description:

  • net_wandb.ipynb - the model and its fitting, with a hyper-parameters selection using the 'Weights and Biases' package
  • net.py - same as 'net_wandb.ipynb' in different format
  • train_input.npy - training data
  • train_labels.npy - trasining labels
  • utils.ipynb - useful functions for the training process. Some of the basic functions were provided by my "3D Data Processing in Structural Biology" course staff
  • utils.py - same as 'utils.ipynb' in different format

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Neural network for protein folding. Receives as input a nanobody sequence and outputs a 3D structure prediction for it.

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