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Start_Here - This repository
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OHSU_TMT_Publications - List of publications from the OHSU core where TMT labeling was used
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Working with PAW results files - A guide to PAW protein results files
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gene set enrichment with STRING - A guide to using STRING-DB for gene set enrichment analyses
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basic_proteomics_workflows - Presentation outlining basic proteomics work
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LC-MSMS - Introduction to liquid chromatography mass spectrometry
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TMT_overview_2020 - Overview of tandem mass tag (TMT) quantitative proteomics
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Data Analysis Overview - Common data analysis methods matched up with their proteomics methods
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PRIDE_submission_tutorial - How to submit mass spectrometry data to PRIDE
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squirrel_platelets_TMT_2020 - An example TMT quantitative proteomics experiment
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Velos_Pro_Use - Instructions for using the Velos Pro mass spectrometer in the core
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Eclipse_to_Fusion_comparison - Comparison of some real time search TMT data between platforms
- Phil Wilmarth's work - Proteomics software and data analysis examples
Phil Wilmarth
August 29, 2021