Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adding PNAPlus Stack #267

Merged
merged 10 commits into from
Sep 13, 2024
Merged

Adding PNAPlus Stack #267

merged 10 commits into from
Sep 13, 2024

Conversation

RylieWeaver
Copy link
Collaborator

This PR adds the PNAPlus stack I've recently created and experimented with. It replicates DimeNet's use of Bessel Functions and Element-Wise product of "message_ij" in its message propagation. In my intuition, and according to some small experiments, this is more effective than raw concatenation as can be done with edge features. Otherwise, this operates the same as regular PNA.

This is an Invariant Stack.

@RylieWeaver
Copy link
Collaborator Author

Note: I changed the MAE threshold for MFC because it was failing with 0.2571 > 0.2 ,and assumed this was cause by just higher losses rather than a structural error.

@RylieWeaver RylieWeaver marked this pull request as draft July 22, 2024 13:44
@RylieWeaver RylieWeaver marked this pull request as ready for review July 22, 2024 13:49
@jychoi-hpc jychoi-hpc requested review from allaffa and pzhanggit July 26, 2024 18:09
@jychoi-hpc
Copy link
Member

It looks good to me. @allaffa and @pzhanggit how do you think?

Copy link
Collaborator

@allaffa allaffa left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good to me. @pzhanggit what do you think?

@allaffa allaffa added the enhancement New feature or request label Aug 9, 2024
@RylieWeaver
Copy link
Collaborator Author

@pzhanggit Is this good to merge?

Copy link
Collaborator

@pzhanggit pzhanggit left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

It looks good to me. I just have one comment. Sorry I somehow missed it

hydragnn/models/PNAPlusStack.py Outdated Show resolved Hide resolved
@RylieWeaver RylieWeaver merged commit fc6ee17 into ORNL:main Sep 13, 2024
2 checks passed
RylieWeaver added a commit to RylieWeaver/HydraGNN that referenced this pull request Oct 17, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants