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programs/packages versions updated so they are compatible with KNIME_… #34

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37 changes: 23 additions & 14 deletions README.md
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Expand Up @@ -46,45 +46,52 @@ Metanodes are made within docker container running KNIME accessible via VNC (htt

#### Programs

- [KNIME](https://www.knime.com/) 3.7.2
- [KNIME](https://www.knime.com/) 4.1.1
- The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.knime.com/downloads/full-license
- [Python](https://www.python.org/) 3.6.8
- [Python](https://www.python.org/) 3.6.9
- The Python consists of the following Python 3.6 License. Licence terms are available here: https://docs.python.org/3.6/license.html
- [Python](https://www.python.org/) 2.7.15+
- The Python consists of the following Python 2.7 License. Licence terms are available here: https://docs.python.org/2.7/license.html
- [R](https://www.r-project.org/) 3.6.1
- [R](https://www.r-project.org/) 3.6.2
- The R consists of the following GNU General Public Licences. Licence terms are available here: https://www.r-project.org/Licenses/

#### KNIME extensions on top of the standard KNIME Analytics Platform installation

- KNIME Python Integration (org.knime.features.python2.feature.group/3.6.1.v201808311614)
- KNIME Interactive R Statistics Integration (org.knime.features.r.feature.group/3.6.1.v201808311614)
- [OpenMS](http://www.openms.de/) 2.3.0 (de.openms.feature.feature.group/2.3.0.201712211252)
- KNIME Python Integration (4.1.1.v202001312017)
- KNIME Interactive R Statistics Integration (4.1.1.v202001312017)
- KNIME Expressions (4.1.0.v201911251323)
- KNIME Report Designer (4.0.0.v201911110939)
- KNIME Testing Framework (4.1.1.v202001312017)
- [OpenMS](http://www.openms.de/) 2.5.0 (2.5.0.202002241222)
- The OpenMS consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause
- [PIA](https://github.com/mpc-bioinformatics/pia) 1.3.7 (de.mpc.pia.feature.feature.group/1.3.7.v201803061425)
- [PIA](https://github.com/mpc-bioinformatics/pia) 1.3.11 (1.3.11.v201907181152)
- The PIA consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause

#### Python 3 or 2 packages (alphabetical order)
- [matplotlib](https://matplotlib.org/) 3.1.0 (python3) and 2.2.4 (python2)
- [matplotlib](https://matplotlib.org/) 3.1.3 (python3) and 2.2.4 (python2)
- The matplotlib consists of the following Python Software Foundation License (BSD compatible). Licence terms are available here: https://matplotlib.org/users/license.html
- [numpy](http://www.numpy.org/) 1.16.4
- [numpy](http://www.numpy.org/) 1.18.1 (python3) and 1.16.6 (python2)
- The numpy consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause
- [pandas](https://pandas.pydata.org/) 0.24.2
- [pandas](https://pandas.pydata.org/) 1.0.1 (python 3) and 1.2.3 (python 2)
- The pandas consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause
- [pip](https://pypi.org/project/pip/) 19.2.1
- The pip consists of the following MIT License (MIT). Licence terms are available here: https://github.com/pypa/pip/blob/master/LICENSE.txt
- [scipy](https://www.scipy.org/) 1.2.2
- [scipy](https://www.scipy.org/) 1.4.1 (python 3) and 1.2.3 (python 2)
- The scipy consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause
- [seaborn](https://seaborn.pydata.org/) 0.9.0
- [seaborn](https://seaborn.pydata.org/) 0.10.0 (python 3) and 0.9.0 (python 2)
- The seaborn consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause
- [statsmodels](https://www.statsmodels.org/stable/index.html) 0.10.1
- [statsmodels](https://www.statsmodels.org/stable/index.html) 0.11.1 (python 3) and 0.10.2 (python 2)
- The statsmodels consists of the following BSD/3clause license. Licence terms are available here: https://opensource.org/licenses/BSD-3-Clause


#### R libraries (alphabetical order)

- [Biobase](https://bioconductor.org/packages/release/bioc/html/Biobase.html)
- The Biobase consists of the following Artistic-2.0 license. Licence terms are available here: https://opensource.org/licenses/Artistic-2.0
- [compositions](https://cran.r-project.org/web/packages/compositions/index.html)
- The compositions consists of the following General Public License (GPL), version >=2 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-3
- [gprofiler2](https://cran.r-project.org/web/packages/gprofiler2/index.html)
- The gprofiler2 consists of the following General Public License (GPL-2/GPL-3), version >=2 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-3
- [imp4p](https://cran.r-project.org/web/packages/imp4p/index.html)
- The imp4p consists of the following General Public License (GPL), version 3 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-3
- [impute](http://www.bioconductor.org/packages/release/bioc/html/impute.html)
Expand All @@ -99,10 +106,12 @@ Metanodes are made within docker container running KNIME accessible via VNC (htt
- The preprocessCore consists of the following GNU Library General Public (LGPL) License, version 2 (or higher) license. Licence terms are available here: https://www.r-project.org/Licenses/LGPL-2
- [proDA](https://const-ae.github.io/proDA/)
- The proDA consists of the following GPL-3 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-3
- [robCompositions](https://cran.r-project.org/web/packages/robCompositions/index.html)
- The compositions consists of the following General Public License (GPL), version >=2 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-3
- [Rserve](https://cran.r-project.org/web/packages/Rserve/index.html)
- The Rserve consists of the following General Public License (GPL), version 2 license. Licence terms are available here: https://www.r-project.org/Licenses/GPL-2
- [UpSetR](https://cran.r-project.org/web/packages/UpSetR/index.html)
- UpSet application (https://caleydo.org/tools/upset/) (The UpSet application consist of the following MIT license. Licence terms are available here: https://github.com/VCG/upset/blob/master/LICENSE)
- The UpSetR consists of the following MIT license and License file. Licence terms are available here: https://cran.r-project.org/web/licenses/MIT and https://cran.r-project.org/web/packages/UpSetR/LICENSE
- [vsn](https://bioconductor.org/packages/release/bioc/html/vsn.html)
- The vsn consists of the following Artistic-2.0 license. Licence terms are available here: https://opensource.org/licenses/Artistic-2.0

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