activate env #2564
Workflow file for this run
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| name: Pytest MSS | ||
| on: | ||
| workflow_call: | ||
| inputs: | ||
| xdist: | ||
| required: true | ||
| type: string | ||
| branch_name: | ||
| required: true | ||
| type: string | ||
| event_name: | ||
| required: true | ||
| type: string | ||
| secrets: | ||
| PAT: | ||
| required: true | ||
| env: | ||
| PAT: ${{ secrets.PAT }} | ||
| EVENT: ${{ inputs.event_name }} | ||
| jobs: | ||
| Test-MSS: | ||
| runs-on: ubuntu-latest | ||
| defaults: | ||
| run: | ||
| shell: bash | ||
| container: | ||
| image: openmss/testing-${{ inputs.branch_name }} | ||
| steps: | ||
| - name: Trust My Directory | ||
| run: git config --global --add safe.directory /__w/MSS/MSS | ||
| - uses: actions/checkout@v3 | ||
| - name: Check for changed dependencies | ||
| run: | | ||
| cmp -s /meta.yaml localbuild/meta.yaml && cmp -s /development.txt requirements.d/development.txt \ | ||
| || (echo Dependencies differ \ | ||
| && echo "triggerdockerbuild=yes" >> $GITHUB_ENV ) | ||
| - name: Always rebuild dependencies for scheduled builds | ||
| if: ${{ success() && inputs.event_name == 'schedule' && inputs.branch_name == 'stable' && env.triggerdockerbuild != 'yes' }} | ||
| run: | | ||
| echo "triggerdockerbuild=yes" >> $GITHUB_ENV | ||
| - name: Reinstall dependencies if changed | ||
| if: ${{ success() && env.triggerdockerbuild == 'yes' }} | ||
| run: | | ||
| cd $GITHUB_WORKSPACE \ | ||
| && source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && mamba deactivate \ | ||
| && cat localbuild/meta.yaml \ | ||
| | sed -n '/^requirements:/,/^test:/p' \ | ||
| | sed -e "s/.*- //" \ | ||
| | sed -e "s/menuinst.*//" \ | ||
| | sed -e "s/.*://" > reqs.txt \ | ||
| && cat requirements.d/development.txt >> reqs.txt \ | ||
| && echo pyvirtualdisplay >> reqs.txt \ | ||
| && cat reqs.txt \ | ||
| && mamba env remove -n mss-${{ inputs.branch_name }}-env \ | ||
| && mamba create -y -n mss-${{ inputs.branch_name }}-env --file reqs.txt | ||
| - name: Print conda list | ||
| run: | | ||
| source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && mamba list | ||
| - name: Run tests | ||
| if: ${{ success() && inputs.xdist == 'no' }} | ||
| timeout-minutes: 25 | ||
| run: | | ||
| cd $GITHUB_WORKSPACE \ | ||
| && source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && pytest -v --durations=20 --reverse --cov=mslib tests \ | ||
| || (for i in {1..5} \ | ||
| ; do pytest tests -v --durations=0 --reverse --last-failed --lfnf=none \ | ||
| && break \ | ||
| ; done) | ||
| - name: Run tests in parallel | ||
| if: ${{ success() && inputs.xdist == 'yes' }} | ||
| timeout-minutes: 25 | ||
| run: | | ||
| cd $GITHUB_WORKSPACE \ | ||
| && source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && pytest -vv -n 6 --dist loadfile --max-worker-restart 0 tests \ | ||
| || (for i in {1..5} \ | ||
| ; do pytest -vv -n 6 --dist loadfile --max-worker-restart 0 tests --last-failed --lfnf=none \ | ||
| && break \ | ||
| ; done) | ||
| - name: Output Monitoring from .pymon db | ||
| if: ${{ success() && inputs.xdist == 'no' }} | ||
| timeout-minutes: 25 | ||
| run | | ||
| cd $GITHUB_WORKSPACE \ | ||
| && source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && QUERY="SELECT ITEM_PATH, ITEM_VARIANT, TOTAL_TIME, MEM_USAGE FROM TEST_METRICS ORDER BY MEM_USAGE" \ | ||
| && sqlite3 -column .pymon "$QUERY" | ||
| - name: Collect coverage | ||
| if: ${{ success() && inputs.event_name == 'push' && inputs.branch_name == 'develop' && inputs.xdist == 'no'}} | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| cd $GITHUB_WORKSPACE \ | ||
| && source /opt/conda/etc/profile.d/conda.sh \ | ||
| && source /opt/conda/etc/profile.d/mamba.sh \ | ||
| && mamba activate mss-${{ inputs.branch_name }}-env \ | ||
| && mamba install coveralls \ | ||
| && coveralls --service=github | ||
| - name: Invoke dockertesting image creation | ||
| if: ${{ always() && inputs.event_name == 'push' && env.triggerdockerbuild == 'yes' && inputs.xdist == 'no'}} | ||
| uses: benc-uk/workflow-dispatch@v1.2.2 | ||
| with: | ||
| workflow: Update Image testing-${{ inputs.branch_name }} | ||
| repo: Open-MSS/dockertesting | ||
| ref: main | ||
| token: ${{ secrets.PAT }} | ||
