Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update cookbooks for openfe 1.0 #122

Merged
merged 2 commits into from
Apr 4, 2024
Merged

Update cookbooks for openfe 1.0 #122

merged 2 commits into from
Apr 4, 2024

Conversation

IAlibay
Copy link
Member

@IAlibay IAlibay commented Apr 3, 2024

Fixes #118

Fixes coobooks for 1.0rc

Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

Copy link

github-actions bot commented Apr 3, 2024

Binder 👈 Launch a binder notebook on branch OpenFreeEnergy/ExampleNotebooks/update-cookbooks

@@ -4,7 +4,6 @@
"cell_type": "markdown",
Copy link
Contributor

@hannahbaumann hannahbaumann Apr 4, 2024

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Line #33.            off_toolkit_backend='ambertools',  # Toolkit to use for partial charge assignment - ambertools


Reply via ReviewNB

@@ -4,7 +4,6 @@
"cell_type": "markdown",
Copy link
Contributor

@hannahbaumann hannahbaumann Apr 4, 2024

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Line #51.            # False: don't apply excplicit charge correction using an alchemical water
Line #51.            # False: don't apply explicit charge correction using an alchemical water


Reply via ReviewNB

Copy link
Contributor

@hannahbaumann hannahbaumann left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Two small spelling things, otherwise lgtm! I haven't tried and run it myself, please let me know if that would be helpful!

@IAlibay IAlibay requested a review from hannahbaumann April 4, 2024 11:44
@IAlibay
Copy link
Member Author

IAlibay commented Apr 4, 2024

Thanks @hannahbaumann ! I added the two typo fixes.

@IAlibay
Copy link
Member Author

IAlibay commented Apr 4, 2024

I haven't tried and run it myself, please let me know if that would be helpful!

I don't think it's necessary, but if you feel like it more checks doesn't hurt either.

@IAlibay IAlibay merged commit 2b8c1c0 into main Apr 4, 2024
4 checks passed
@IAlibay IAlibay deleted the update-cookbooks branch April 4, 2024 18:51
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Choose and Configure a Protocol cookbook is out of date
2 participants