chore(deps): bump the pipenv group in /services/datalad with 6 updates

[dependabot]

Bumps the pipenv group in /services/datalad with 6 updates:

Package	From	To
boto3	1.34.158	1.35.10
pygithub	2.3.0	2.4.0
uvicorn	0.30.5	0.30.6
sentry-sdk	2.12.0	2.13.0
datalad	1.1.2	1.1.3
pytest-asyncio	0.23.8	0.24.0

Updates boto3 from 1.34.158 to 1.35.10

Commits

• 85cba10 Merge branch 'release-1.35.10'
• 7264985 Bumping version to 1.35.10
• 4e8bc10 Add changelog entries from botocore
• 6f961e2 Merge branch 'release-1.35.9'
• 25ebb36 Merge branch 'release-1.35.9' into develop
• ed635b5 Bumping version to 1.35.9
• 3a06379 Add changelog entries from botocore
• 0733f58 Merge branch 'release-1.35.8'
• 1cbfeec Merge branch 'release-1.35.8' into develop
• 79f7f2c Bumping version to 1.35.8
• Additional commits viewable in compare view

Updates pygithub from 2.3.0 to 2.4.0

Release notes

Sourced from pygithub's releases.

v2.4.0

New features

• Allow custom authentication @​kliem (#2987)

Improvements

• Add has_discussions to AuthenticatedUser and Repository classes @​cwlls (#3020)
• Update more SecurityAndAnalysis attributes @​squatched (#3025)
• Implement support for re-running only failed workflow jobs. @​chrisgavin (#2983)
• Add possibility to mark a thread/notification as done @​m42e (#2985)
• Add "pull_request_review_id" to PullRequestComment object @​stroebs (#3000)
• Add minimize and unminimize functions for IssueComment class @​arash77 (#3005)
• Support Organization/Repository custom properties @​jackylamhk (#2968)
• Add dict type to add_attribute script @​jackylamhk (#2977)
• Allow for deleting and restoring branch associated with PR @​austinsasko (#1784)
• Add "archived_at" to Organization object. @​billnapier (#2974)
• Adds Security & Analysis To Repository @​squatched (#2960)
• Add added_by and last_used attributes to RepositoryKey @​ramiro (#2952)
• Add make_latest to GitRelease.update_release @​treee111 (#2888)
• Make Commit.files return PaginatedList @​iarspider (#2939)

Bug Fixes

• Fix GraphQL Queries with Variables @​kgal-pan (#3002)

Maintenance

• Remove support for Python 3.7 @​EnricoMi @​khneal (#3008, #2975)
• docs: add missing code-block @​kumy (#2982)
• Update README.md @​KPCOFGS (#2961)
• CI: Fix test success job @​EnricoMi (#3010)

Changelog

Sourced from pygithub's changelog.

Version 2.4.0 (August 26, 2024)

Breaking Changes ^^^^^^^^^^^^^^^^

• The github.Commit.Commit class provides a files property that used to return a list[github.File.File], which has now been changed to PaginatedList[github.File.File]. This breaks user code that assumes a list:

.. code-block:: python

files = repo.get_commit("7266e812ed2976ea36a4303edecfe5d75522343f").files
no_of_files = len(files)

This will raise a TypeError: object of type 'PaginatedList' has no len(), as the returned PaginatedList does not support the len() method. Use the totalCount property instead:

.. code-block:: python

files = repo.get_commit("7266e812ed2976ea36a4303edecfe5d75522343f").files
no_of_files = files.totalCount

• Removed support for Python 3.7.

New features ^^^^^^^^^^^^

• Allow custom authentication (#2987) (32b826fd)

Improvements ^^^^^^^^^^^^

• Add has_discussions to AuthenticatedUser and Repository classes (#3020) (75224167)
• Update more SecurityAndAnalysis attributes (#3025) (fa168279)
• Implement support for re-running only failed workflow jobs. (#2983) (23e87563)
• Add possibility to mark a thread/notification as done (#2985) (5ba24379)
• Add "pull_request_review_id" to PullRequestComment object (#3000) (6a59cf82)
• Add minimize and unminimize functions for IssueComment class (#3005) (09c4f58e)
• Support Organization/Repository custom properties (#2968) (c5e6b702)
• Add dict type to add_attribute script (#2977) (2a04f9cc)
• Allow for deleting and restoring branch associated with PR (#1784) (4ba1e412)
• Add "archived_at" to Organization object. (#2974) (cc766a6f)
• Adds Security & Analysis To Repository (#2960) (f22af54d)
• Add added_by and last_used attributes to RepositoryKey (#2952) (5dffa64d)
• Add make_latest to GitRelease.update_release (#2888) (60136105)
• Make Commit.files return PaginatedList (#2939) (fa885f00)

Bug Fixes ^^^^^^^^^

... (truncated)

Commits

• 8508735 Release v2.4.0 (#3027)
• 7522416 Add has_discussions to AuthenticatedUser and Repository classes (#3020)
• fa16827 Update more SecurityAndAnalysis attributes (#3025)
• 23e8756 Implement support for re-running only failed workflow jobs. (#2983)
• d0e0507 Complete dropping Python 3.7 (#2975)
• 32b826f Allow custom authentication (#2987)
• 5ba2437 Add possibility to mark a thread/notification as done (#2985)
• 61d37dc CI: Fix test success job (#3010)
• 38197d6 Revert "Add has_discussions field to Repository class" (#3009)
• 7213cd0 Add has_discussions field to Repository class (#2995)
• Additional commits viewable in compare view

Updates uvicorn from 0.30.5 to 0.30.6

Release notes

Sourced from uvicorn's releases.

Version 0.30.6

Fixed

• Don't warn when upgrade is not WebSocket and depedencies are installed (#2360)

---

Full Changelog: encode/uvicorn@0.30.5...0.30.6

Changelog

Sourced from uvicorn's changelog.

0.30.6 (2024-08-13)

Fixed

• Don't warn when upgrade is not WebSocket and depedencies are installed (#2360)

Commits

• 7dc027d Version 0.30.6 (#2428)
• 587a1cc fix: upgrade is not websocket and dependencies are installed, should not warn...
• cee31a6 test(signal): add sleep to ensure shutdown completion (#2427)
• eba64ef ci: timeout for test suite runs to 30 minutes (#2426)
• 0f513d2 Remove signal testing order dependency (#2382)
• See full diff in compare view

Updates sentry-sdk from 2.12.0 to 2.13.0

Release notes

Sourced from sentry-sdk's releases.

2.13.0

Various fixes & improvements

• New integration: Ray (#2400) (#2444) by @​glowskir

  Usage: (add the RayIntegration to your sentry_sdk.init() call and make sure it is called in the worker processes)

  import ray
  import sentry_sdk
  from sentry_sdk.integrations.ray import RayIntegration
  def init_sentry():
  sentry_sdk.init(
  dsn="...",
  traces_sample_rate=1.0,
  integrations=[RayIntegration()],
  )
  init_sentry()
  ray.init(
  runtime_env=dict(worker_process_setup_hook=init_sentry),
  )

  For more information, see the documentation for the Ray integration.

• New integration: Litestar (#2413) (#3358) by @​KellyWalker

  Usage: (add the LitestarIntegration to your sentry_sdk.init())

  from litestar import Litestar, get
  import sentry_sdk
  from sentry_sdk.integrations.litestar import LitestarIntegration
  sentry_sdk.init(
  dsn="...",
  traces_sample_rate=1.0,
  integrations=[LitestarIntegration()],
  )
  @​get("/")
  async def index() -> str:
  return "Hello, world!"
  app = Litestar(...)

  For more information, see the documentation for the Litestar integration.

... (truncated)

Changelog

Sourced from sentry-sdk's changelog.

2.13.0

Various fixes & improvements

• New integration: Ray (#2400) (#2444) by @​glowskir

  Usage: (add the RayIntegration to your sentry_sdk.init() call and make sure it is called in the worker processes)

  import ray
  import sentry_sdk
  from sentry_sdk.integrations.ray import RayIntegration
  def init_sentry():
  sentry_sdk.init(
  dsn="...",
  traces_sample_rate=1.0,
  integrations=[RayIntegration()],
  )
  init_sentry()
  ray.init(
  runtime_env=dict(worker_process_setup_hook=init_sentry),
  )

  For more information, see the documentation for the Ray integration.

• New integration: Litestar (#2413) (#3358) by @​KellyWalker

  Usage: (add the LitestarIntegration to your sentry_sdk.init())

  from litestar import Litestar, get
  import sentry_sdk
  from sentry_sdk.integrations.litestar import LitestarIntegration
  sentry_sdk.init(
  dsn="...",
  traces_sample_rate=1.0,
  integrations=[LitestarIntegration()],
  )
  @​get("/")
  async def index() -> str:
  return "Hello, world!"
  app = Litestar(...)

  For more information, see the documentation for the Litestar integration.

... (truncated)

Commits

• 570307c Updated changelog
• 4c1ea7a release: 2.13.0
• 17a6cf0 feat: Add ray integration support (#2400) (#2444)
• 4858996 Expose custom_repr function that precedes safe_repr invocation in serializer ...
• 275c63e ref(sessions): Deprecate hub-based sessions.py logic (#3419)
• 6a4e729 ref(sessions): Deprecate is_auto_session_tracking_enabled (#3428)
• a6cb9b1 Add note to generated yaml files (#3423)
• 19c4069 test(sessions): Remove unnecessary line (#3418)
• da0392f Dramatiq integration from @​jacobsvante (#3397)
• 7d46709 Serialize vars early to avoid living references (#3409)
• Additional commits viewable in compare view

Updates datalad from 1.1.2 to 1.1.3

Release notes

Sourced from datalad's releases.

1.1.3

🧪 Tests

• Account for the fix in git-annex behavior in test_add_delete_after_and_drop_subdir. [PR #7640](datalad/datalad#7640) (by @​yarikoptic)

Changelog

Sourced from datalad's changelog.

1.1.3 (2024-08-08)

🧪 Tests

• Account for the fix in git-annex behavior in test_add_delete_after_and_drop_subdir. [PR #7640](datalad/datalad#7640) (by @​yarikoptic)

Commits

• d4ce9ce [skip ci] Update docs/source/changelog.rst and CITATION.cff
• 073ee4d [skip ci] Update CHANGELOG
• 5df0caf Merge pull request #7640 from yarikoptic/bf-test
• 16c3f56 [release-action] Autogenerate changelog snippet for PR 7640
• 3640790 Merge pull request #7633 from adswa/rtd
• fdbae9d Account for the fix in git-annex behavior in test_add_delete_after_and_drop_s...
• 90dbc45 INFRA: Add RTD-recommended configuration ahead of deprecations
• See full diff in compare view

Updates pytest-asyncio from 0.23.8 to 0.24.0

Release notes

Sourced from pytest-asyncio's releases.

pytest-asyncio 0.24.0

0.24.0 (2024-08-22)

• BREAKING: Updated minimum supported pytest version to v8.2.0
• Adds an optional loop_scope keyword argument to pytest.mark.asyncio. This argument controls which event loop is used to run the marked async test. #706, #871
• Deprecates the optional scope keyword argument to pytest.mark.asyncio for API consistency with pytest_asyncio.fixture. Users are encouraged to use the loop_scope keyword argument, which does exactly the same.
• Raises an error when passing scope or loop_scope as a positional argument to @pytest.mark.asyncio. #812
• Fixes a bug that caused module-scoped async fixtures to fail when reused in other modules #862 #668

pytest-asyncio 0.24.0a1

0.24.0 (UNRELEASED)

• BREAKING: Updated minimum supported pytest version to v8.2.0
• Adds an optional loop_scope keyword argument to pytest.mark.asyncio. This argument controls which event loop is used to run the marked async test. #706, #871
• Deprecates the optional scope keyword argument to pytest.mark.asyncio for API consistency with pytest_asyncio.fixture. Users are encouraged to use the loop_scope keyword argument, which does exactly the same.
• Raises an error when passing scope or loop_scope as a positional argument to @pytest.mark.asyncio. #812
• Fixes a bug that caused module-scoped async fixtures to fail when reused in other modules #862 #668

pytest-asyncio 0.24.0a0

0.24.0 (UNRELEASED)

• Adds an optional loop_scope keyword argument to pytest.mark.asyncio. This argument controls which event loop is used to run the marked async test. #706, #871
• Deprecates the optional scope keyword argument to pytest.mark.asyncio for API consistency with pytest_asyncio.fixture. Users are encouraged to use the loop_scope keyword argument, which does exactly the same.
• Raises an error when passing scope or loop_scope as a positional argument to @pytest.mark.asyncio. #812

Commits

• fb5422f docs: Set release date for v0.24 in changelog.
• 6dc7f58 docs: Add migration guides for pytest-asyncio v0.21 and v0.23.
• 1bfc181 Wire Sphinx builds into the RTD config via tox
• f03cf13 Build(deps): Bump hypothesis in /dependencies/default
• 69540bf Build(deps): Bump attrs from 24.1.0 to 24.2.0 in /dependencies/default
• b0ccfc5 Build(deps): Bump hypothesis in /dependencies/default
• 574f1db Build(deps): Bump babel from 2.15.0 to 2.16.0 in /dependencies/docs
• ae30dac Update .readthedocs.yaml to install pytest-asyncio
• 972a704 Derive project version using importlib
• d587a52 [pre-commit.ci] pre-commit autoupdate
• Additional commits viewable in compare view

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[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 44.00%. Comparing base (147ae17) to head (6b3487a).
Report is 13 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #3135   +/-   ##
=======================================
  Coverage   44.00%   44.00%           
=======================================
  Files         595      595           
  Lines       37808    37808           
  Branches     1126     1126           
=======================================
  Hits        16636    16636           
  Misses      20968    20968           
  Partials      204      204           

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