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Oshlack

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  1. splatter splatter Public

    Simple simulation of single-cell RNA sequencing data

    R 217 57

  2. JAFFA JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    C++ 87 21

  3. Corset Corset Public

    Software for clustering de novo assembled transcripts and counting overlapping reads

    C++ 68 18

  4. Lace Lace Public

    Building SuperTranscripts: A linear representation of transcriptome data

    Python 67 19

  5. STRetch STRetch Public

    Method for detecting STR expansions from short-read sequencing data

    Python 62 15

  6. Clinker Clinker Public

    Gene Fusion Visualiser

    Python 51 12

Repositories

Showing 10 of 40 repositories
  • Barbie Public
    Oshlack/Barbie’s past year of commit activity
    R 0 0 0 0 Updated Nov 2, 2024
  • ALLSorts Public

    ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.

    Oshlack/ALLSorts’s past year of commit activity
    Python 15 MIT 8 5 3 Updated Oct 25, 2024
  • splatter Public

    Simple simulation of single-cell RNA sequencing data

    Oshlack/splatter’s past year of commit activity
    R 217 GPL-3.0 57 7 1 Updated Oct 24, 2024
  • Oshlack/flex-doublets’s past year of commit activity
    TeX 0 0 0 0 Updated Oct 8, 2024
  • Damsel Public
    Oshlack/Damsel’s past year of commit activity
    R 0 0 0 0 Updated Oct 4, 2024
  • missMethyl Public

    Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.

    Oshlack/missMethyl’s past year of commit activity
    R 10 4 5 0 Updated Sep 15, 2024
  • JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    Oshlack/JAFFA’s past year of commit activity
    C++ 87 21 10 0 Updated Aug 22, 2024
  • xenanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline for xenograph RNA-seq experiments

    Oshlack/xenanoseq’s past year of commit activity
    Nextflow 0 MIT 80 0 0 Updated Jul 24, 2024
  • MINTIE Public

    Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

    Oshlack/MINTIE’s past year of commit activity
    Python 34 MIT 7 2 0 Updated Jul 1, 2024
  • oshlack.github.io Public

    Oshlack Lab website

    Oshlack/oshlack.github.io’s past year of commit activity
    JavaScript 2 5 0 1 Updated May 9, 2024

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