Intermittent warnings "Unable to revert mtime: /opt/conda/envs/birdy/fonts" confuse new Jupyter users #97
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tlvu
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Mar 18, 2022
… /opt/conda/envs/birdy/fonts" The warning appears only once and may or may not re-appear again after a "Restart kernel". It is completely intermittent. See issue #97.
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@huard @richardarsenault I might possibly have a fix for this intermittent warning "Unable to revert mtime: /opt/conda/envs/birdy/fonts". I need to test my fix. Do you happen to remember which Raven notebooks the warning was showing up? This do not happen during Jenkins automated test so I have to reproduce this live, in a Jupyter env. |
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@tlvu From what I understand, the first notebook (01_intorduction_to_ravenpy) was one of the culprits, but it only happened to a few (maybe 10?) participants out of the 50 that were attending at the time. When they re-ran the cells, it worked again. So I fear it is related to the server being overwhelmed somehow, and that it will not be so easy to reproduce. I was a bit busy explaining things but Perhaps @huard and @cjauvin have more insight since they were more in the "debugging" mode. |
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Weirdly enough I was not able to reproduce this problem with our current Jupyter env. I was able to reproduce before. This seems to be very intermittent. I attempted a blind fix in #101. Hopefully it works. If not, re-open this issue. |
tlvu
added a commit
that referenced
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Apr 7, 2022
New Jupyter env build with new xlrd, pre-commit, pin dask, distributed, cf_xarray, latest of everything else ## Relevant Changes ```diff > - pre-commit=2.17.0=py38h578d9bd_0 > - xlrd=2.0.1=pyhd8ed1ab_3 < - xclim=0.32.1=pyhd8ed1ab_0 > - xclim=0.34.0=pyhd8ed1ab_0 < - cfgrib=0.9.9.1=pyhd8ed1ab_1 > - cfgrib=0.9.10.1=pyhd8ed1ab_0 < - cftime=1.5.1.1=py38h6c62de6_1 > - cftime=1.6.0=py38h3ec907f_0 < - intake-xarray=0.5.0=pyhd8ed1ab_0 > - intake-xarray=0.6.0=pyhd8ed1ab_0 < - pandas=1.3.5=py38h43a58ef_0 > - pandas=1.4.1=py38h43a58ef_0 < - regionmask=0.8.0=pyhd8ed1ab_1 > - regionmask=0.9.0=pyhd8ed1ab_0 < - rioxarray=0.9.1=pyhd8ed1ab_0 > - rioxarray=0.10.3=pyhd8ed1ab_0 < - xarray=0.20.2=pyhd8ed1ab_0 > - xarray=2022.3.0=pyhd8ed1ab_0 < - zarr=2.10.3=pyhd8ed1ab_0 > - zarr=2.11.1=pyhd8ed1ab_0 ``` ## New Packages Pins `dask` and `distributed` was causing `PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb` to run excessively slow. `cf_xarray` caused `WPS_example.ipynb` to be slow. See #100 for more info why these had to be pinned. ## Related Issue / Discussion - Fixes #97 - #99 - #100 - PR to deploy this new Jupyter env to PAVICS: bird-house/birdhouse-deploy#240 ## Test Results - Deployed as "beta" image in production for bokeh visualization performance regression testing. - Manual test notebook https://github.com/Ouranosinc/PAVICS-landing/blob/master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb for bokeh visualization performance and it looks fine. - Jenkins build, only known intermittent error: subset-user-input.ipynb: RemoteDisconnected, slow WPS_example.ipynb: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/preview-docker-build/37/console, logs: [job-PAVICS-e2e-workflow-tests-preview-docker-build-37-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8401086/job-PAVICS-e2e-workflow-tests-preview-docker-build-37-consoleText.txt) - Jenkins build 2, only known intermittent error: subset-user-input.ipynb: RemoteDisconnected, opendap.ipynb runtime crashed: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-build/7/console, logs: [job-PAVICS-e2e-workflow-tests-new-docker-build-7-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8401197/job-PAVICS-e2e-workflow-tests-new-docker-build-7-consoleText.txt) - Jenkins build 3, only known intermittent error: stress-test.ipynb "ValueError: max() arg is an empty sequence": http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-build/8/console, logs: [job-PAVICS-e2e-workflow-tests-new-docker-build-8-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8410742/job-PAVICS-e2e-workflow-tests-new-docker-build-8-consoleText.txt) - Jenkins build 4, only known intermittent error: WMS_example.ipynb: SyntaxError: not a PNG file, stress-tests.ipynb: ValueError: max() arg is an empty sequence, , slow WPS_example.ipynb: http://jenkins.ouranos.ca/job/PAVICS-e2e-workflow-tests/job/new-docker-build/12/console, logs: [job-PAVICS-e2e-workflow-tests-new-docker-build-12-consoleText.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8411737/job-PAVICS-e2e-workflow-tests-new-docker-build-12-consoleText.txt) ## Additional Information - Full `conda env export` diff: [220121-220401-conda-env-export.diff.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8401067/220121-220401-conda-env-export.diff.txt) ```diff 9,10c9,10 < - 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nbformat=5.1.3=pyhd8ed1ab_0 --- > - nbformat=5.2.0=pyhd8ed1ab_0 333c332,333 < - networkx=2.6.3=pyhd8ed1ab_1 --- > - networkx=2.7.1=pyhd8ed1ab_1 > - nodeenv=1.6.0=pyhd8ed1ab_0 335c335,336 < - notebook=6.4.7=pyha770c72_0 --- > - notebook=6.4.10=pyha770c72_0 > - notebook-shim=0.1.0=pyhd8ed1ab_0 337,338c338,339 < - nss=3.74=hb5efdd6_0 < - numba=0.55.0=py38h4bf6c61_0 --- > - nss=3.77=h2350873_0 > - numba=0.55.1=py38h4bf6c61_0 341,342c342 < - oauthlib=3.1.1=pyhd8ed1ab_0 < - olefile=0.46=pyh9f0ad1d_1 --- > - oauthlib=3.2.0=pyhd8ed1ab_0 345c345 < - openssl=1.1.1l=h7f98852_0 --- > - openssl=1.1.1n=h166bdaf_0 351,352c351,352 < - pandas=1.3.5=py38h43a58ef_0 < - pandoc=2.17.0.1=h7f98852_0 --- > - pandas=1.4.1=py38h43a58ef_0 > - pandoc=2.17.1.1=ha770c72_0 354,356c354,356 < - panel=0.12.6=pyhd8ed1ab_0 < - param=1.12.0=pyh6c4a22f_0 < - paramiko=2.9.2=pyhd8ed1ab_0 --- > - panel=0.12.7=pyhd8ed1ab_0 > - param=1.12.1=pyh6c4a22f_0 > - paramiko=2.10.3=pyhd8ed1ab_0 359d358 < - pathspec=0.9.0=pyhd8ed1ab_0 362,364c361,363 < - pexpect=4.8.0=pyh9f0ad1d_2 < - pickleshare=0.7.5=py_1003 < - pillow=8.4.0=py38h8e6f84c_0 --- > - pexpect=4.8.0=py38h32f6830_1 > - pickleshare=0.7.5=py38h32f6830_1002 > - pillow=9.0.1=py38h0ee0e06_2 366c365 < - pip=21.3.1=pyhd8ed1ab_0 --- > - pip=22.0.4=pyhd8ed1ab_0 368,371c367,370 < - platformdirs=2.3.0=pyhd8ed1ab_0 < - plotly=5.5.0=pyhd8ed1ab_0 < - pluggy=1.0.0=py38h578d9bd_2 < - pooch=1.5.2=pyhd8ed1ab_0 --- > - platformdirs=2.5.1=pyhd8ed1ab_0 > - plotly=5.6.0=pyhd8ed1ab_0 > - pluggy=1.0.0=py38h578d9bd_3 > - pooch=1.6.0=pyhd8ed1ab_0 374a374 > - pre-commit=2.17.0=py38h578d9bd_0 376,378c376,378 < - prometheus_client=0.12.0=pyhd8ed1ab_0 < - prompt-toolkit=3.0.24=pyha770c72_0 < - prompt_toolkit=3.0.24=hd8ed1ab_0 --- > - prometheus_client=0.13.1=pyhd8ed1ab_0 > - prompt-toolkit=3.0.27=pyha770c72_0 > - prompt_toolkit=3.0.27=hd8ed1ab_0 380c380 < - protobuf=3.19.3=py38h709712a_0 --- > - protobuf=3.20.0=py38hfa26641_0 385c385 < - pure_eval=0.2.1=pyhd8ed1ab_1 --- > - pure_eval=0.2.2=pyhd8ed1ab_0 392c392 < - pycurl=7.44.1=py38h996a351_1 --- > - pycurl=7.45.1=py38h61f0cdf_0 394c394 < - pydap=3.2.2=pyh9f0ad1d_1001 --- > - pydap=3.3.0=pyhd8ed1ab_0 399c399 < - pyopenssl=21.0.0=pyhd8ed1ab_0 --- > - pyopenssl=22.0.0=pyhd8ed1ab_0 408c408 < - pyshp=2.1.3=pyh44b312d_0 --- > - pyshp=2.2.0=pyhd8ed1ab_0 410,411c410,411 < - pytest=6.2.5=py38h578d9bd_2 < - python=3.8.12=hb7a2778_2_cpython --- > - pytest=7.1.1=py38h578d9bd_1 > - python=3.8.13=h582c2e5_0_cpython 413c413 < - python-eccodes=2021.05.1=py38h6c62de6_0 --- > - python-eccodes=1.4.0=py38h71d37f0_0 416c416 < - pytz=2021.3=pyhd8ed1ab_0 --- > - pytz=2022.1=pyhd8ed1ab_0 418,420c418,420 < - pyviz_comms=2.1.0=pyhd8ed1ab_0 < - pywavelets=1.2.0=py38h6c62de6_1 < - pyyaml=6.0=py38h497a2fe_3 --- > - pyviz_comms=2.2.0=pyhd8ed1ab_0 > - pywavelets=1.3.0=py38h3ec907f_0 > - pyyaml=6.0=py38h0a891b7_4 423,425c423,425 < - qtconsole=5.2.2=pyhd8ed1ab_1 < - qtconsole-base=5.2.2=pyhd8ed1ab_1 < - qtpy=2.0.0=pyhd8ed1ab_0 --- > - qtconsole=5.3.0=pyhd8ed1ab_0 > - qtconsole-base=5.3.0=pyhd8ed1ab_0 > - qtpy=2.0.1=pyhd8ed1ab_0 430c430 < - regionmask=0.8.0=pyhd8ed1ab_1 --- > - regionmask=0.9.0=pyhd8ed1ab_0 432c432 < - requests-oauthlib=1.3.0=pyh9f0ad1d_0 --- > - requests-oauthlib=1.3.1=pyhd8ed1ab_0 434c434 < - rioxarray=0.9.1=pyhd8ed1ab_0 --- > - rioxarray=0.10.3=pyhd8ed1ab_0 438c438 < - ruamel.yaml=0.17.19=py38h497a2fe_0 --- > - ruamel.yaml=0.17.21=py38h497a2fe_0 440,441c440,441 < - s3fs=2022.1.0=pyhd8ed1ab_0 < - scikit-image=0.19.1=py38h43a58ef_0 --- > - s3fs=2022.2.0=pyhd8ed1ab_1 > - scikit-image=0.19.2=py38h43a58ef_0 443,444c443,444 < - scipy=1.7.3=py38h56a6a73_0 < - scp=0.14.2=pyhd8ed1ab_0 --- > - scipy=1.8.0=py38h56a6a73_1 > - scp=0.14.4=pyhd8ed1ab_0 447d446 < - setuptools=59.8.0=py38h578d9bd_0 449c448 < - siphon=0.9=pyhd8ed1ab_2 --- > - siphon=0.9=py38h578d9bd_1 452,453c451 < - snappy=1.1.8=he1b5a44_3 < - sniffio=1.2.0=py38h578d9bd_2 --- > - sniffio=1.2.0=py38h578d9bd_3 458,461c456,459 < - sqlalchemy=1.4.31=py38h497a2fe_0 < - sqlite=3.37.0=h9cd32fc_0 < - stack_data=0.1.4=pyhd8ed1ab_0 < - statsmodels=0.13.1=py38h6c62de6_0 --- > - sqlalchemy=1.4.33=py38h0a891b7_0 > - sqlite=3.37.1=h4ff8645_0 > - stack_data=0.2.0=pyhd8ed1ab_0 > - statsmodels=0.13.2=py38h6c62de6_0 464,466c462,464 < - terminado=0.12.1=py38h578d9bd_1 < - testpath=0.5.0=pyhd8ed1ab_0 < - threadpoolctl=3.0.0=pyh8a188c0_0 --- > - terminado=0.13.3=py38h578d9bd_0 > - testpath=0.6.0=pyhd8ed1ab_0 > - threadpoolctl=3.1.0=pyh8a188c0_0 468c466 < - tifffile=2021.11.2=pyhd8ed1ab_0 --- > - tifffile=2020.6.3=py_0 470c468 < - tk=8.6.11=h27826a3_1 --- > - tk=8.6.12=h27826a3_0 472c470 < - tomli=1.2.2=pyhd8ed1ab_0 --- > - tomli=2.0.1=pyhd8ed1ab_0 474,475c472,473 < - tornado=6.1=py38h497a2fe_2 < - tqdm=4.62.3=pyhd8ed1ab_0 --- > - tornado=6.1=py38h0a891b7_3 > - tqdm=4.63.1=pyhd8ed1ab_0 478c476 < - trio=0.19.0=py38h578d9bd_1 --- > - trio=0.20.0=py38h578d9bd_0 480,484c478,482 < - typed-ast=1.5.1=py38h497a2fe_0 < - typing-extensions=4.0.1=hd8ed1ab_0 < - typing_extensions=4.0.1=pyha770c72_0 < - tzcode=2021e=h7f98852_0 < - tzdata=2021e=he74cb21_0 --- > - typing-extensions=4.1.1=hd8ed1ab_0 > - typing_extensions=4.1.1=pyha770c72_0 > - tzcode=2022a=h166bdaf_0 > - tzdata=2022a=h191b570_0 > - ukkonen=1.0.1=py38h1fd1430_1 486,487c484,486 < - urllib3=1.25.11=py_0 < - voila=0.3.0=pyhd8ed1ab_1 --- > - urllib3=1.26.9=pyhd8ed1ab_0 > - virtualenv=20.14.0=py38h578d9bd_1 > - voila=0.3.5=pyhd8ed1ab_0 491,493c490,492 < - websocket-client=1.2.3=pyhd8ed1ab_0 < - websockets=10.1=py38h497a2fe_0 < - werkzeug=2.0.2=pyhd8ed1ab_0 --- > - websocket-client=1.3.2=pyhd8ed1ab_0 > - websockets=10.2=py38h0a891b7_0 > - werkzeug=2.1.0=pyhd8ed1ab_0 496,500c495,499 < - widgetsnbextension=3.5.2=py38h578d9bd_1 < - wrapt=1.13.3=py38h497a2fe_1 < - wsproto=1.0.0=py38h578d9bd_2 < - xarray=0.20.2=pyhd8ed1ab_0 < - xclim=0.32.1=pyhd8ed1ab_0 --- > - widgetsnbextension=3.6.0=py38h578d9bd_0 > - wrapt=1.14.0=py38h0a891b7_0 > - wsproto=1.1.0=py38h578d9bd_0 > - xarray=2022.3.0=pyhd8ed1ab_0 > - xclim=0.34.0=pyhd8ed1ab_0 503,504c502,503 < - xeus=2.3.1=hab3612f_0 < - xeus-python=0.13.6=py38hcf90354_1 --- > - xeus=2.4.0=hab3612f_0 > - xeus-python=0.13.6=py38h9f61dbb_2 506a506 > - xlrd=2.0.1=pyhd8ed1ab_3 531c531 < - xyzservices=2022.1.1=pyhd8ed1ab_0 --- > - xyzservices=2022.3.0=pyhd8ed1ab_0 535c535 < - zarr=2.10.3=pyhd8ed1ab_0 --- > - zarr=2.11.1=pyhd8ed1ab_0 537,540c537,539 < - zfp=0.5.5=h9c3ff4c_8 < - zict=2.0.0=py_0 < - zipp=3.7.0=pyhd8ed1ab_0 < - zlib=1.2.11=h36c2ea0_1013 --- > - zict=2.1.0=pyhd8ed1ab_0 > - zipp=3.7.0=pyhd8ed1ab_1 > - zlib=1.2.11=h166bdaf_1014 547c546 < - innerscope==0.5.0 --- > - innerscope==0.5.1 555a555 > - setuptools==61.3.0 ``` - Full new `conda env export`: [220401-conda-env-export.yml.txt](https://github.com/Ouranosinc/PAVICS-e2e-workflow-tests/files/8401069/220401-conda-env-export.yml.txt) ``` name: birdy channels: - cdat - conda-forge - defaults dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=1_gnu - affine=2.3.1=pyhd8ed1ab_0 - aiobotocore=2.1.2=pyhd8ed1ab_0 - aiohttp=3.8.1=py38h497a2fe_0 - aioitertools=0.10.0=pyhd8ed1ab_0 - aiosignal=1.2.0=pyhd8ed1ab_0 - alembic=1.7.7=pyhd8ed1ab_0 - alsa-lib=1.2.3=h516909a_0 - ansi2html=1.7.0=py38h578d9bd_0 - anyio=3.5.0=py38h578d9bd_0 - appdirs=1.4.4=pyh9f0ad1d_0 - argon2-cffi=21.3.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py38h497a2fe_1 - asciitree=0.3.3=py_2 - asttokens=2.0.5=pyhd8ed1ab_0 - async-timeout=4.0.2=pyhd8ed1ab_0 - async_generator=1.10=py_0 - attrs=21.4.0=pyhd8ed1ab_0 - babel=2.9.1=pyh44b312d_0 - backcall=0.2.0=pyh9f0ad1d_0 - backports=1.0=py_2 - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0 - bcrypt=3.2.0=py38h497a2fe_2 - beautifulsoup4=4.10.0=pyha770c72_0 - bias_correction=0.4=pyhd8ed1ab_0 - birdy=0.8.1=pyh6c4a22f_1 - bleach=4.1.0=pyhd8ed1ab_0 - blinker=1.4=py_1 - blosc=1.21.0=h9c3ff4c_0 - bokeh=2.4.2=py38h578d9bd_0 - boltons=21.0.0=pyhd8ed1ab_0 - boost-cpp=1.74.0=h312852a_4 - botocore=1.23.24=pyhd8ed1ab_0 - bottleneck=1.3.4=py38h3ec907f_0 - branca=0.4.2=pyhd8ed1ab_0 - brotli=1.0.9=h7f98852_6 - brotli-bin=1.0.9=h7f98852_6 - brotli-python=1.0.9=py38h709712a_6 - brotlipy=0.7.0=py38h497a2fe_1003 - bzip2=1.0.8=h7f98852_4 - c-ares=1.18.1=h7f98852_0 - ca-certificates=2021.10.8=ha878542_0 - cached-property=1.5.2=hd8ed1ab_1 - cached_property=1.5.2=pyha770c72_1 - cachetools=5.0.0=pyhd8ed1ab_0 - cairo=1.16.0=h6cf1ce9_1008 - cartopy=0.20.1=py38hf9a4893_1 - cdat_info=8.2.1=pyhd8ed1ab_2 - cdms2=3.1.5=py38hc1ef740_14 - cdtime=3.1.4=py38hc54c017_7 - certifi=2021.10.8=py38h578d9bd_2 - certipy=0.1.3=py_0 - cf_xarray=0.6.3=pyhd8ed1ab_0 - cffi=1.15.0=py38h3931269_0 - cfgrib=0.9.10.1=pyhd8ed1ab_0 - cfgv=3.3.1=pyhd8ed1ab_0 - cfitsio=3.470=hb418390_7 - cftime=1.6.0=py38h3ec907f_0 - charset-normalizer=2.0.12=pyhd8ed1ab_0 - click=8.1.2=py38h578d9bd_0 - click-plugins=1.1.1=py_0 - cligj=0.7.2=pyhd8ed1ab_1 - climpred=2.2.0=pyhd8ed1ab_0 - clisops=0.8.0=pyh6c4a22f_0 - cloudpickle=2.0.0=pyhd8ed1ab_0 - colorama=0.4.4=pyh9f0ad1d_0 - colorcet=3.0.0=pyhd8ed1ab_0 - configurable-http-proxy=4.5.0=node16_h3b247e2_2 - coverage=6.3.2=py38h0a891b7_2 - cryptography=36.0.2=py38h2b5fc30_0 - curl=7.82.0=h7bff187_0 - cycler=0.11.0=pyhd8ed1ab_0 - cytoolz=0.11.2=py38h497a2fe_1 - dash=2.3.1=pyhd8ed1ab_0 - dask=2022.1.0=pyhd8ed1ab_0 - dask-core=2022.1.0=pyhd8ed1ab_0 - datashader=0.13.0=pyh6c4a22f_0 - datashape=0.5.4=py_1 - dbus=1.13.6=h5008d03_3 - debugpy=1.5.1=py38h709712a_0 - decorator=5.1.1=pyhd8ed1ab_0 - defusedxml=0.7.1=pyhd8ed1ab_0 - descartes=1.1.0=py_4 - distarray=2.12.2=pyhd8ed1ab_2 - distlib=0.3.4=pyhd8ed1ab_0 - distributed=2022.1.0=py38h578d9bd_0 - docopt=0.6.2=py_1 - docrep=0.3.2=pyh44b312d_0 - eccodes=2.25.0=hc08acdf_0 - elfutils=0.186=he364ef2_0 - entrypoints=0.4=pyhd8ed1ab_0 - eofs=1.4.0=py_0 - esgf-compute-api=2.3.9=0_h1234567_ - esmf=8.2.0=mpi_mpich_h4975321_100 - esmpy=8.2.0=mpi_mpich_py38h9147699_101 - executing=0.8.3=pyhd8ed1ab_0 - expat=2.4.8=h27087fc_0 - fasteners=0.17.3=pyhd8ed1ab_0 - fastprogress=1.0.2=pyhd8ed1ab_0 - filelock=3.6.0=pyhd8ed1ab_0 - findlibs=0.0.2=pyhd8ed1ab_0 - fiona=1.8.20=py38hbb147eb_2 - flask=2.1.1=pyhd8ed1ab_0 - flask-compress=1.11=pyhd8ed1ab_0 - flit-core=3.7.1=pyhd8ed1ab_0 - folium=0.12.1.post1=pyhd8ed1ab_1 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - font-ttf-inconsolata=3.000=h77eed37_0 - font-ttf-source-code-pro=2.038=h77eed37_0 - font-ttf-ubuntu=0.83=hab24e00_0 - fontconfig=2.13.96=h8e229c2_2 - fonts-conda-ecosystem=1=0 - fonts-conda-forge=1=0 - fonttools=4.31.2=py38h0a891b7_0 - freeglut=3.2.2=h9c3ff4c_1 - freetype=2.10.4=h0708190_1 - freexl=1.0.6=h7f98852_0 - frozenlist=1.3.0=py38h0a891b7_1 - fsspec=2022.2.0=pyhd8ed1ab_0 - funcsigs=1.0.2=py_3 - future=0.18.2=py38h578d9bd_4 - g2clib=1.6.3=heb9ad7a_1 - gcsfs=2022.2.0=pyhd8ed1ab_0 - gdal=3.3.3=py38hcf2042a_0 - geckodriver=0.30.0=h3146498_0 - geopandas=0.10.2=pyhd8ed1ab_1 - geopandas-base=0.10.2=pyha770c72_1 - geos=3.9.1=h9c3ff4c_2 - geotiff=1.7.0=hcfb7246_3 - geoviews=1.9.5=pyhd8ed1ab_0 - geoviews-core=1.9.5=pyha770c72_0 - gettext=0.19.8.1=h73d1719_1008 - giflib=5.2.1=h36c2ea0_2 - gitdb=4.0.9=pyhd8ed1ab_0 - gitpython=3.1.27=pyhd8ed1ab_0 - gnutls=3.6.13=h85f3911_1 - google-api-core=2.5.0=pyhd8ed1ab_0 - google-auth=2.6.2=pyh6c4a22f_0 - google-auth-oauthlib=0.5.1=pyhd8ed1ab_0 - google-cloud-core=2.2.2=pyh6c4a22f_0 - google-cloud-storage=2.1.0=pyh6c4a22f_0 - google-crc32c=1.1.2=py38h8838a9a_2 - google-resumable-media=2.1.0=pyh6c4a22f_0 - googleapis-common-protos=1.56.0=py38h578d9bd_0 - greenlet=1.1.2=py38h709712a_1 - grpcio=1.45.0=py38ha0cdfde_0 - gst-plugins-base=1.18.5=hf529b03_3 - gstreamer=1.18.5=h9f60fe5_3 - h11=0.13.0=pyhd8ed1ab_0 - h5netcdf=1.0.0=pyhd8ed1ab_0 - h5py=3.6.0=nompi_py38hfbb2109_100 - haversine=2.5.1=pyhd8ed1ab_0 - hdf4=4.2.15=h10796ff_3 - hdf5=1.12.1=mpi_mpich_h08b82f9_4 - heapdict=1.0.1=py_0 - holoviews=1.14.8=pyhd8ed1ab_0 - hvplot=0.7.3=pyh6c4a22f_0 - icu=68.2=h9c3ff4c_0 - identify=2.4.12=pyhd8ed1ab_0 - idna=3.3=pyhd8ed1ab_0 - imagecodecs-lite=2019.12.3=py38h6c62de6_4 - imageio=2.16.1=pyhcf75d05_0 - importlib-metadata=4.11.3=py38h578d9bd_1 - importlib_metadata=4.11.3=hd8ed1ab_1 - importlib_resources=5.6.0=pyhd8ed1ab_0 - iniconfig=1.1.1=pyh9f0ad1d_0 - intake=0.6.5=pyhd8ed1ab_0 - intake-esm=2021.8.17=pyhd8ed1ab_0 - intake-geopandas=0.4.0=pyhd8ed1ab_0 - intake-thredds=2021.6.16=pyhd8ed1ab_0 - intake-xarray=0.6.0=pyhd8ed1ab_0 - ipykernel=6.11.0=py38h7f3c49e_0 - ipyleaflet=0.15.0=pyhd8ed1ab_3 - ipython=8.2.0=py38h578d9bd_0 - ipython_genutils=0.2.0=py_1 - ipywidgets=7.7.0=pyhd8ed1ab_0 - itsdangerous=2.1.2=pyhd8ed1ab_0 - jasper=2.0.33=ha77e612_0 - jbig=2.1=h7f98852_2003 - jedi=0.18.1=py38h578d9bd_0 - jinja2=3.1.1=pyhd8ed1ab_0 - jmespath=0.10.0=pyh9f0ad1d_0 - joblib=1.1.0=pyhd8ed1ab_0 - jpeg=9e=h7f98852_0 - json-c=0.15=h98cffda_0 - json5=0.9.5=pyh9f0ad1d_0 - jsonpickle=2.1.0=pyhd8ed1ab_0 - jsonschema=4.4.0=pyhd8ed1ab_0 - jupyter=1.0.0=py38h578d9bd_7 - jupyter-archive=3.3.0=pyhd8ed1ab_1 - jupyter-dash=0.4.1=pyhd8ed1ab_2 - jupyter-resource-usage=0.5.1=pyhd8ed1ab_0 - jupyter-server-mathjax=0.2.5=pyhc268e32_0 - jupyter_bokeh=3.0.4=pyhd8ed1ab_0 - jupyter_client=7.2.1=pyhd8ed1ab_0 - jupyter_console=6.4.3=pyhd8ed1ab_0 - jupyter_core=4.9.2=py38h578d9bd_0 - jupyter_server=1.16.0=pyhd8ed1ab_1 - jupyter_telemetry=0.1.0=pyhd8ed1ab_1 - jupyterhub=2.2.2=hd8ed1ab_0 - jupyterhub-base=2.2.2=pyhd8ed1ab_0 - jupyterlab=3.3.2=pyhd8ed1ab_0 - jupyterlab-git=0.36.0=pyhd8ed1ab_0 - jupyterlab-system-monitor=0.8.0=pyhd8ed1ab_1 - jupyterlab-topbar=0.6.1=pyhd8ed1ab_2 - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0 - jupyterlab_server=2.12.0=pyhd8ed1ab_0 - jupyterlab_widgets=1.1.0=pyhd8ed1ab_0 - jupytext=1.13.7=pyhd0ecf6b_0 - kealib=1.4.14=h87e4c3c_3 - keyutils=1.6.1=h166bdaf_0 - kiwisolver=1.4.2=py38h43d8883_0 - krb5=1.19.3=h3790be6_0 - lazy-object-proxy=1.7.1=py38h497a2fe_0 - lcms2=2.12=hddcbb42_0 - ld_impl_linux-64=2.36.1=hea4e1c9_2 - lerc=3.0=h9c3ff4c_0 - libaec=1.0.6=h9c3ff4c_0 - libarchive=3.5.2=hccf745f_1 - libblas=3.9.0=13_linux64_openblas - libbrotlicommon=1.0.9=h7f98852_6 - libbrotlidec=1.0.9=h7f98852_6 - libbrotlienc=1.0.9=h7f98852_6 - libcblas=3.9.0=13_linux64_openblas - libcdms=3.1.2=h3bdf4ba_117 - libcf=1.0.3=py38h80f51ce_113 - libclang=11.1.0=default_ha53f305_1 - libcrc32c=1.1.2=h9c3ff4c_0 - libcurl=7.82.0=h7bff187_0 - libdap4=3.20.6=hd7c4107_2 - libdeflate=1.10=h7f98852_0 - libdrm=2.4.109=h7f98852_0 - libdrs=3.1.2=hf593df3_118 - libdrs_f=3.1.2=h7e76ec7_114 - libedit=3.1.20191231=he28a2e2_2 - libev=4.33=h516909a_1 - libevent=2.1.10=h9b69904_4 - libffi=3.4.2=h7f98852_5 - libgcc-ng=11.2.0=h1d223b6_14 - libgdal=3.3.3=h356f897_0 - libgfortran-ng=11.2.0=h69a702a_14 - libgfortran5=11.2.0=h5c6108e_14 - libglib=2.70.2=h174f98d_4 - libglu=9.0.0=he1b5a44_1001 - libgomp=11.2.0=h1d223b6_14 - libiconv=1.16=h516909a_0 - libidn2=2.3.2=h7f98852_0 - libkml=1.3.0=h238a007_1014 - liblapack=3.9.0=13_linux64_openblas - libllvm11=11.1.0=hf817b99_3 - libmicrohttpd=0.9.75=h7f98852_0 - libnetcdf=4.8.1=mpi_mpich_h319fa22_1 - libnghttp2=1.47.0=h727a467_0 - libnsl=2.0.0=h7f98852_0 - libogg=1.3.4=h7f98852_1 - libopenblas=0.3.18=pthreads_h8fe5266_0 - libopus=1.3.1=h7f98852_1 - libpciaccess=0.16=h516909a_0 - libpng=1.6.37=h21135ba_2 - libpq=13.5=hd57d9b9_1 - libprotobuf=3.20.0=h6239696_0 - librttopo=1.1.0=h1185371_6 - libsodium=1.0.18=h36c2ea0_1 - libspatialindex=1.9.3=h9c3ff4c_4 - libspatialite=5.0.1=h8796b1e_9 - libssh2=1.10.0=ha56f1ee_2 - libstdcxx-ng=11.2.0=he4da1e4_14 - libtiff=4.3.0=h542a066_3 - libunistring=0.9.10=h7f98852_0 - libuuid=2.32.1=h7f98852_1000 - libuv=1.40.0=h7f98852_0 - libvorbis=1.3.7=h9c3ff4c_0 - libwebp=1.2.2=h3452ae3_0 - libwebp-base=1.2.2=h7f98852_1 - libxcb=1.13=h7f98852_1004 - libxkbcommon=1.0.3=he3ba5ed_0 - libxml2=2.9.12=h72842e0_0 - libxslt=1.1.33=h15afd5d_2 - libzip=1.8.0=h4de3113_1 - libzlib=1.2.11=h166bdaf_1014 - llvmlite=0.38.0=py38h4630a5e_0 - locket=0.2.0=py_2 - lxml=4.8.0=py38h0a891b7_1 - lz4=3.1.10=py38hebdc3cf_0 - lz4-c=1.9.3=h9c3ff4c_1 - lzo=2.10=h516909a_1000 - mako=1.2.0=pyhd8ed1ab_0 - mamba_gator=5.1.2=pyhd8ed1ab_0 - mapclassify=2.4.3=pyhd8ed1ab_0 - markdown=3.3.6=pyhd8ed1ab_0 - markdown-it-py=1.1.0=pyhd8ed1ab_0 - markupsafe=2.1.1=py38h0a891b7_1 - matplotlib=3.5.1=py38h578d9bd_0 - matplotlib-base=3.5.1=py38hf4fb855_0 - matplotlib-inline=0.1.3=pyhd8ed1ab_0 - mdit-py-plugins=0.3.0=pyhd8ed1ab_0 - memory_profiler=0.60.0=pyhd8ed1ab_0 - mesalib=21.2.5=h0e4506f_3 - mistune=0.8.4=py38h497a2fe_1005 - mpi=1.0=mpich - mpi4py=3.1.3=py38he865349_0 - mpich=4.0.1=h846660c_100 - msgpack-python=1.0.3=py38h43d8883_1 - multidict=6.0.2=py38h497a2fe_0 - multipledispatch=0.6.0=py_0 - munch=2.5.0=py_0 - munkres=1.1.4=pyh9f0ad1d_0 - mysql-common=8.0.28=haf5c9bc_2 - mysql-libs=8.0.28=h28c427c_2 - nbclassic=0.3.7=pyhd8ed1ab_0 - nbclient=0.5.13=pyhd8ed1ab_0 - nbconvert=6.4.5=py38h578d9bd_0 - nbconvert-core=6.4.5=pyhd8ed1ab_1 - nbdime=3.1.1=pyhd8ed1ab_0 - nbformat=5.2.0=pyhd8ed1ab_0 - nbresuse=0.4.0=pyhd8ed1ab_0 - nbval=0.9.6=pyh9f0ad1d_0 - nc-time-axis=1.4.0=pyhd8ed1ab_0 - ncurses=6.3=h9c3ff4c_0 - nest-asyncio=1.5.4=pyhd8ed1ab_0 - nested_dict=1.61=pyhd3deb0d_0 - netcdf-fortran=4.5.4=mpi_mpich_h1364a43_0 - netcdf4=1.5.8=nompi_py38h2823cc8_101 - nettle=3.6=he412f7d_0 - networkx=2.7.1=pyhd8ed1ab_1 - nodeenv=1.6.0=pyhd8ed1ab_0 - nodejs=16.13.1=hb931c9a_0 - notebook=6.4.10=pyha770c72_0 - notebook-shim=0.1.0=pyhd8ed1ab_0 - nspr=4.32=h9c3ff4c_1 - nss=3.77=h2350873_0 - numba=0.55.1=py38h4bf6c61_0 - numcodecs=0.9.1=py38h709712a_2 - numpy=1.21.5=py38h87f13fb_0 - oauthlib=3.2.0=pyhd8ed1ab_0 - openblas=0.3.18=pthreads_h4748800_0 - openjpeg=2.4.0=hb52868f_1 - openssl=1.1.1n=h166bdaf_0 - ostrich=21.03.16=h4bd325d_1 - outcome=1.1.0=pyhd8ed1ab_0 - owslib=0.25.0=pyhd8ed1ab_0 - packaging=21.3=pyhd8ed1ab_0 - pamela=1.0.0=py_0 - pandas=1.4.1=py38h43a58ef_0 - pandoc=2.17.1.1=ha770c72_0 - pandocfilters=1.5.0=pyhd8ed1ab_0 - panel=0.12.7=pyhd8ed1ab_0 - param=1.12.1=pyh6c4a22f_0 - paramiko=2.10.3=pyhd8ed1ab_0 - parso=0.8.3=pyhd8ed1ab_0 - partd=1.2.0=pyhd8ed1ab_0 - patsy=0.5.2=pyhd8ed1ab_0 - pcre=8.45=h9c3ff4c_0 - pexpect=4.8.0=py38h32f6830_1 - pickleshare=0.7.5=py38h32f6830_1002 - pillow=9.0.1=py38h0ee0e06_2 - pint=0.18=pyhd8ed1ab_0 - pip=22.0.4=pyhd8ed1ab_0 - pixman=0.40.0=h36c2ea0_0 - platformdirs=2.5.1=pyhd8ed1ab_0 - plotly=5.6.0=pyhd8ed1ab_0 - pluggy=1.0.0=py38h578d9bd_3 - pooch=1.6.0=pyhd8ed1ab_0 - poppler=21.09.0=ha39eefc_3 - poppler-data=0.4.11=hd8ed1ab_0 - postgresql=13.5=h2510834_1 - pre-commit=2.17.0=py38h578d9bd_0 - proj=8.1.1=h277dcde_2 - prometheus_client=0.13.1=pyhd8ed1ab_0 - prompt-toolkit=3.0.27=pyha770c72_0 - prompt_toolkit=3.0.27=hd8ed1ab_0 - properscoring=0.1=py_0 - protobuf=3.20.0=py38hfa26641_0 - pscript=0.7.5=pyhd3deb0d_0 - psutil=5.9.0=py38h497a2fe_0 - pthread-stubs=0.4=h36c2ea0_1001 - ptyprocess=0.7.0=pyhd3deb0d_0 - pure_eval=0.2.2=pyhd8ed1ab_0 - py=1.11.0=pyh6c4a22f_0 - pyasn1=0.4.8=py_0 - pyasn1-modules=0.2.7=py_0 - pycparser=2.21=pyhd8ed1ab_0 - pyct=0.4.6=py_0 - pyct-core=0.4.6=py_0 - pycurl=7.45.1=py38h61f0cdf_0 - pydantic=1.9.0=py38h497a2fe_0 - pydap=3.3.0=pyhd8ed1ab_0 - pygeos=0.10.2=py38hb7fe4a8_0 - pygments=2.11.2=pyhd8ed1ab_0 - pyjwt=2.3.0=pyhd8ed1ab_1 - pynacl=1.5.0=py38h497a2fe_0 - pyopenssl=22.0.0=pyhd8ed1ab_0 - pyparsing=3.0.7=pyhd8ed1ab_0 - pyproj=3.2.1=py38h80797bf_2 - pyqt=5.12.3=py38h578d9bd_8 - pyqt-impl=5.12.3=py38h0ffb2e6_8 - pyqt5-sip=4.19.18=py38h709712a_8 - pyqtchart=5.12=py38h7400c14_8 - pyqtwebengine=5.12.1=py38h7400c14_8 - pyrsistent=0.18.1=py38h497a2fe_0 - pyshp=2.2.0=pyhd8ed1ab_0 - pysocks=1.7.1=py38h578d9bd_4 - pytest=7.1.1=py38h578d9bd_1 - python=3.8.13=h582c2e5_0_cpython - python-dateutil=2.8.2=pyhd8ed1ab_0 - python-eccodes=1.4.0=py38h71d37f0_0 - python-json-logger=2.0.1=pyh9f0ad1d_0 - python_abi=3.8=2_cp38 - pytz=2022.1=pyhd8ed1ab_0 - pyu2f=0.1.5=pyhd8ed1ab_0 - pyviz_comms=2.2.0=pyhd8ed1ab_0 - pywavelets=1.3.0=py38h3ec907f_0 - pyyaml=6.0=py38h0a891b7_4 - pyzmq=22.3.0=py38h2035c66_1 - qt=5.12.9=hda022c4_4 - qtconsole=5.3.0=pyhd8ed1ab_0 - qtconsole-base=5.3.0=pyhd8ed1ab_0 - qtpy=2.0.1=pyhd8ed1ab_0 - rasterio=1.2.10=py38hfd64e68_0 - raven-hydro=3.0.4.322=ha46ed4c_2 - ravenpy=0.7.8=pyh8a188c0_0 - readline=8.1=h46c0cb4_0 - regionmask=0.9.0=pyhd8ed1ab_0 - requests=2.27.1=pyhd8ed1ab_0 - requests-oauthlib=1.3.1=pyhd8ed1ab_0 - retrying=1.3.3=py_2 - rioxarray=0.10.3=pyhd8ed1ab_0 - roocs-utils=0.5.0=pyh6c4a22f_0 - rsa=4.8=pyhd8ed1ab_0 - rtree=0.9.7=py38h02d302b_3 - ruamel.yaml=0.17.21=py38h497a2fe_0 - ruamel.yaml.clib=0.2.6=py38h497a2fe_0 - s3fs=2022.2.0=pyhd8ed1ab_1 - scikit-image=0.19.2=py38h43a58ef_0 - scikit-learn=1.0.2=py38h1561384_0 - scipy=1.8.0=py38h56a6a73_1 - scp=0.14.4=pyhd8ed1ab_0 - selenium=4.1.0=pyhd8ed1ab_0 - send2trash=1.8.0=pyhd8ed1ab_0 - shapely=1.7.1=py38hb7fe4a8_5 - siphon=0.9=py38h578d9bd_1 - six=1.16.0=pyh6c4a22f_0 - smmap=3.0.5=pyh44b312d_0 - sniffio=1.2.0=py38h578d9bd_3 - snuggs=1.4.7=py_0 - sortedcontainers=2.4.0=pyhd8ed1ab_0 - soupsieve=2.3.1=pyhd8ed1ab_0 - sparse=0.13.0=pyhd8ed1ab_0 - sqlalchemy=1.4.33=py38h0a891b7_0 - sqlite=3.37.1=h4ff8645_0 - stack_data=0.2.0=pyhd8ed1ab_0 - statsmodels=0.13.2=py38h6c62de6_0 - tblib=1.7.0=pyhd8ed1ab_0 - tenacity=8.0.1=pyhd8ed1ab_0 - terminado=0.13.3=py38h578d9bd_0 - testpath=0.6.0=pyhd8ed1ab_0 - threadpoolctl=3.1.0=pyh8a188c0_0 - threddsclient=0.4.2=py_0 - tifffile=2020.6.3=py_0 - tiledb=2.3.4=he87e0bf_0 - tk=8.6.12=h27826a3_0 - toml=0.10.2=pyhd8ed1ab_0 - tomli=2.0.1=pyhd8ed1ab_0 - toolz=0.11.2=pyhd8ed1ab_0 - tornado=6.1=py38h0a891b7_3 - tqdm=4.63.1=pyhd8ed1ab_0 - traitlets=5.1.1=pyhd8ed1ab_0 - traittypes=0.2.1=pyh9f0ad1d_2 - trio=0.20.0=py38h578d9bd_0 - trio-websocket=0.9.2=pyhd8ed1ab_0 - typing-extensions=4.1.1=hd8ed1ab_0 - typing_extensions=4.1.1=pyha770c72_0 - tzcode=2022a=h166bdaf_0 - tzdata=2022a=h191b570_0 - ukkonen=1.0.1=py38h1fd1430_1 - unicodedata2=14.0.0=py38h497a2fe_0 - urllib3=1.26.9=pyhd8ed1ab_0 - virtualenv=20.14.0=py38h578d9bd_1 - voila=0.3.5=pyhd8ed1ab_0 - wcwidth=0.2.5=pyh9f0ad1d_2 - webencodings=0.5.1=py_1 - webob=1.8.7=pyhd8ed1ab_0 - websocket-client=1.3.2=pyhd8ed1ab_0 - websockets=10.2=py38h0a891b7_0 - werkzeug=2.1.0=pyhd8ed1ab_0 - wget=1.20.3=ha56f1ee_1 - wheel=0.37.1=pyhd8ed1ab_0 - widgetsnbextension=3.6.0=py38h578d9bd_0 - wrapt=1.14.0=py38h0a891b7_0 - wsproto=1.1.0=py38h578d9bd_0 - xarray=2022.3.0=pyhd8ed1ab_0 - xclim=0.34.0=pyhd8ed1ab_0 - xerces-c=3.2.3=h9d8b166_3 - xesmf=0.6.2=pyhd8ed1ab_0 - xeus=2.4.0=hab3612f_0 - xeus-python=0.13.6=py38h9f61dbb_2 - xeus-python-shell=0.2.0=pyhd8ed1ab_0 - xhistogram=0.3.1=pyhd8ed1ab_0 - xlrd=2.0.1=pyhd8ed1ab_3 - xorg-damageproto=1.2.1=h7f98852_1002 - xorg-fixesproto=5.0=h7f98852_1002 - xorg-glproto=1.4.17=h7f98852_1002 - xorg-inputproto=2.3.2=h7f98852_1002 - xorg-kbproto=1.0.7=h7f98852_1002 - xorg-libice=1.0.10=h7f98852_0 - xorg-libsm=1.2.3=hd9c2040_1000 - xorg-libx11=1.7.2=h7f98852_0 - xorg-libxau=1.0.9=h7f98852_0 - xorg-libxdamage=1.1.5=h7f98852_1 - xorg-libxdmcp=1.1.3=h7f98852_0 - xorg-libxext=1.3.4=h7f98852_1 - xorg-libxfixes=5.0.3=h7f98852_1004 - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrandr=1.5.2=h7f98852_1 - xorg-libxrender=0.9.10=h7f98852_1003 - xorg-randrproto=1.5.0=h7f98852_1001 - xorg-renderproto=0.11.1=h7f98852_1002 - xorg-util-macros=1.19.3=h7f98852_0 - xorg-xextproto=7.3.0=h7f98852_1002 - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - xorg-xproto=7.0.31=h7f98852_1007 - xrft=0.4.1=pyhd8ed1ab_0 - xskillscore=0.0.24=pyhd8ed1ab_0 - xyzservices=2022.3.0=pyhd8ed1ab_0 - xz=5.2.5=h516909a_1 - yaml=0.2.5=h7f98852_2 - yarl=1.7.2=py38h497a2fe_1 - zarr=2.11.1=pyhd8ed1ab_0 - zeromq=4.3.4=h9c3ff4c_1 - zict=2.1.0=pyhd8ed1ab_0 - zipp=3.7.0=pyhd8ed1ab_1 - zlib=1.2.11=h166bdaf_1014 - zstd=1.5.2=ha95c52a_0 - pip: - astunparse==1.6.3 - colour==0.1.5 - geojson==2.5.0 - handcalcs==1.4.1 - innerscope==0.5.1 - ipython-blocking==0.3.1 - jupyterlab-logout==0.5.0 - jupyternotify==0.1.15 - more-itertools==8.12.0 - pixiedust==1.1.19 - pymetalink==6.4 - pytest-tornasync==0.6.0.post2 - requests-magpie==0.1.1 - setuptools==61.3.0 prefix: /opt/conda/envs/birdy ```
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This warning happens only in "interactive" mode when a real user uses the Jupyter env in a browser. During nightly Jenkins unattended run, it does not happen.
The warning appears only once and may or may not re-appear again after a "Restart kernel". It is completely intermittent.
FYI @huard
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