Merge pull request #360 from fyvon/data/efotrait_category_ischemic_st…

…roke Adding 'ischemic stroke' to proper trait categories
PGScatalog · May 7, 2024 · b8201b1 · b8201b1
2 parents 1fa3ea0 + 416feb2
commit b8201b1
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/release/scripts/UpdateEFO.py b/release/scripts/UpdateEFO.py
@@ -24,7 +24,7 @@ class UpdateEFO:
         'Biological process': { colour_key: '#BEBADA', parent_key: 'biological process', efo_key: ['GO_0008150'] },
         'Body measurement': { colour_key: '#66CCFF', parent_key: 'body weights and measures', efo_key: ['EFO_0004324'] },
         'Cancer': { colour_key: '#BC80BD', parent_key: 'neoplasm', efo_key: ['EFO_0000616'] },
-        'Cardiovascular disease': { colour_key: '#B33232', parent_key: 'cardiovascular disease', efo_key: ['EFO_0000319'] },
+        'Cardiovascular disease': { colour_key: '#B33232', parent_key: 'cardiovascular disease', efo_key: ['EFO_0000319', 'HP_0001626'] },
         'Cardiovascular measurement': { colour_key: '#80B1D3', parent_key: 'cardiovascular measurement', efo_key: ['EFO_0004298'] },
         'Digestive system disorder': { colour_key: '#B7704C', parent_key: 'digestive system disease', efo_key: ['EFO_0000405'] },
         'Hematological measurement': { colour_key: '#8DD3C7', parent_key: 'hematological measurement', efo_key: ['EFO_0004503'] },
@@ -33,7 +33,7 @@ class UpdateEFO:
         'Lipid or lipoprotein measurement': { colour_key: '#B3DE69', parent_key: 'lipid or lipoprotein measurement', efo_key: ['EFO_0004529','EFO_0004732','EFO_0005105'] },
         'Liver enzyme measurement': { colour_key: '#669900', parent_key: 'liver enzyme measurement', efo_key: ['EFO_0004582'] },
         'Metabolic disorder': { colour_key: '#FDB462', parent_key: 'metabolic disease', efo_key: ['EFO_0000589'] },
-        'Neurological disorder': { colour_key: '#FFFFB3', parent_key: 'nervous system disease', efo_key: ['EFO_0000618'] },
+        'Neurological disorder': { colour_key: '#FFFFB3', parent_key: 'nervous system disease', efo_key: ['EFO_0000618', 'HP_0000707'] },
         'Other disease': { colour_key: '#FF3399', parent_key: 'disease', efo_key: ['EFO_0000408'] },
         'Other measurement': { colour_key: '#006699', parent_key: 'measurement', efo_key: ['EFO_0001444'] },
         'Other trait': { colour_key: '#FB8072', parent_key: 'experimental factor', efo_key: ['EFO_0000001'] },