fix errors with Seurat5 #64
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| # Workflow derived from https://github.com/r-lib/actions/blob/master/examples/pkgdown.yaml | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ['*'] | |
| name: pkgdown | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::., SeuratData=?ignore | |
| needs: website | |
| - name: Install SeuratData | |
| if: always() | |
| run: Rscript -e "install.packages('remotes', repos = 'http://cran.us.r-project.org'); remotes:::install_github('satijalab/seurat-data')" | |
| shell: bash | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4.4.1 | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs | |
| git-config-name: ${{ github.actor }} | |
| git-config-email: ${{ github.actor }}@users.noreply.github.com |