testing python 3.13 #86
Workflow file for this run
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| name: Measure Python & MATLAB Code Coverage | |
| env: | |
| CLONE_PATH: ${{ github.workspace }} | |
| BENDFO_M_PATH: ${{ github.workspace }}/BenDFO/m | |
| BENDFO_DATA_PATH: ${{ github.workspace }}/BenDFO/data | |
| POUNDERS_PATH: ${{ github.workspace }}/pounders/m | |
| MSAMP_PATH: ${{ github.workspace }}/manifold_sampling/m | |
| PY_COV_FILE: coverage_ibcdfo | |
| PY_COV_XML_FILE: cobertura_ibcdfo_py.xml | |
| PY_COV_HTML_FILE: htmlcov_ibcdfo_py | |
| POUNDERS_M_COV_HTML_FILE: htmlcov_ibcdfo_pounders_m | |
| POUNDERS_M_COV_XML_FILE: cobertura_ibcdfo_pounders_m.xml | |
| MSAMP_M_COV_HTML_FILE: htmlcov_ibcdfo_msamp_m | |
| MSAMP_M_COV_XML_FILE: cobertura_ibcdfo_msamp_m.xml | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| jobs: | |
| # ----- MEASURE COVERAGE ACROSS ALL PYTHON PACKAGES | |
| coverage_py: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| # We only need to measure coverage with a single test setup. Ideally | |
| # this will be the latest version of python supported. | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.13"] | |
| steps: | |
| # -- General Setup Steps | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup Python with tox | |
| run: $CLONE_PATH/.github/workflows/setup_tox_github_action.sh | |
| # -- Run Coverage for All Python Packages | |
| - name: Generate Python coverage reports | |
| run: | | |
| pushd $CLONE_PATH/ibcdfo_pypkg | |
| COVERAGE_FILE=$PY_COV_FILE COVERAGE_XML_FILE=$PY_COV_XML_FILE COVERAGE_HTML_FILE=$PY_COV_HTML_FILE tox -r -e coverage,report | |
| mv $PY_COV_FILE $CLONE_PATH | |
| mv $PY_COV_XML_FILE $CLONE_PATH | |
| mv $PY_COV_HTML_FILE $CLONE_PATH | |
| popd | |
| # -- Publish as artifact for users and subsequent jobs | |
| - name: Archive Python coverage results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-coverage-results | |
| path: | | |
| ${{ env.PY_COV_FILE }} | |
| ${{ env.PY_COV_XML_FILE }} | |
| ${{ env.PY_COV_HTML_FILE }} | |
| # ----- MEASURE COVERAGE ACROSS ALL MATLAB PACKAGES | |
| coverage_m: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| # We only need to measure coverage with a single test setup. Ideally | |
| # this will be the latest MATLAB release supported. | |
| matrix: | |
| os: [ubuntu-latest] | |
| matlab-release: ["R2024b"] | |
| steps: | |
| # -- General Setup Steps | |
| - name: Checkout IBCDFO repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Checkout BenDFO repository | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: POptUS/BenDFO | |
| path: BenDFO | |
| - name: Set up MATLAB ${{ matrix.matlab-release }} | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: ${{ matrix.matlab-release }} | |
| products: Optimization_Toolbox | |
| # -- Test Execution Step | |
| # This requires R2023b or higher | |
| - name: Generate code coverage report for MATLAB code | |
| uses: matlab-actions/run-command@v2 | |
| with: | |
| command: > | |
| addpath("${{ env.BENDFO_M_PATH }}"), | |
| addpath("${{ env.BENDFO_DATA_PATH }}"), | |
| cd ${{ env.POUNDERS_PATH }}, | |
| [results, cov_p] = runtests("IncludeSubfolders", true, "ReportCoverageFor", pwd), | |
| assertSuccess(results), | |
| cd ${{ env.MSAMP_PATH }}, | |
| [results, cov_ms] = runtests("IncludeSubfolders", true, "ReportCoverageFor", pwd), | |
| assertSuccess(results), | |
| cd ${{ env.CLONE_PATH }}, | |
| fp = generateHTMLReport(cov_p, "${{ env.POUNDERS_M_COV_HTML_FILE }}"), | |
| generateCoberturaReport(cov_p, "${{ env.POUNDERS_M_COV_XML_FILE }}"); | |
| fp = generateHTMLReport(cov_ms, "${{ env.MSAMP_M_COV_HTML_FILE }}"), | |
| generateCoberturaReport(cov_ms, "${{ env.MSAMP_M_COV_XML_FILE }}"); | |
| # -- Publish as artifact for users and subsequent jobs | |
| - name: Archive MATLAB coverage results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: matlab-coverage-results | |
| path: | | |
| ${{ env.POUNDERS_M_COV_HTML_FILE }} | |
| ${{ env.POUNDERS_M_COV_XML_FILE }} | |
| ${{ env.MSAMP_M_COV_HTML_FILE }} | |
| ${{ env.MSAMP_M_COV_XML_FILE }} | |
| # ----- PUBLISH FULL CODE COVERAGE REPORT | |
| publish: | |
| needs: [coverage_py, coverage_m] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Access Python coverage reports | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-coverage-results | |
| path: ${{ env.CLONE_PATH }} | |
| - name: Access MATLAB coverage reports | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: matlab-coverage-results | |
| path: ${{ env.CLONE_PATH }} | |
| - name: Upload coverage report to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: | | |
| ${{ env.CLONE_PATH }}/${{ env.POUNDERS_M_COV_XML_FILE }}, | |
| ${{ env.CLONE_PATH }}/${{ env.MSAMP_M_COV_XML_FILE }}, | |
| ${{ env.CLONE_PATH }}/${{ env.PY_COV_XML_FILE }} | |
| fail_ci_if_error: true |