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PRIDE Archive data provider API

This API defines the main interfaces and objects that will be serve by each of the persistence solutions (e.g. MongoDB, Solr). The API works as a proxy for other libraries to serve the PRIDE data.

Main packages

project : Defines the functions an attributes of a PRIDE Project.

file: Defines the functions of a file associated with a PRIDE project.

user: Defines the PRIDE user profile system.

data: Defines most of the data structures for PRIDE data objects:

  • Modifications
  • Peptides
  • PSMs
  • Proteins
  • Spectrum

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