Skip to content

PSI-Lab/cDeepbind

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

cDeepBind

cDeepBind is a fast and accurate model for learning sequence and structure specificities of RNA binding proteins.

Model architecture

arch

Reproducing the training and evaluation workflow

Setup an environment that contains all the necessary packages first.

conda env create -f environment.yml
conda activate cdeepbind
python setup.py develop

To train a new model follow:

python encode_data.py -d 2013
python train_model.py

To run evaluations on a pre-trained model follow:

python evaluate_model.py

Results

img img

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published