Scalable De Novo Isoform Discovery
IsoSeq contains the newest tools to identify transcripts in PacBio
single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power
the IsoSeq GUI-based analysis application. A composable workflow of existing
tools and algorithms, combined with new clustering techniques, allows to process
the ever-increasing yield of PacBio machines. Starting with version 3.4, support
for UMI and cell barcode based deduplication has been added. Version 4.0 adds a
new cluster2 tool that enables clustering of hundreds of millions of HiFi
reads.
The binary has been renamed from isoseq3 to isoseq to enable major version
changes. Bioconda will still generate a isoseq3 softlink. The old bioconda
isoseq3 package will automatically install the latest isoseq package.
Latest version can be installed via bioconda package isoseq.
Please refer to our official pbbioconda page for information on Installation, Support, License, Copyright, and Disclaimer.
- Visit isoseq.how for the latest documentation
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