An HLA star-calling tool for PacBio HiFi data types
HiFiHLA generates high resolution (4-field) HLA allele calls from PacBio HiFi data. HiFiHLA identifies the closest matching allele(s) and any differences between a sample and the IPD-IMGT/HLA database. Acceptable data types include aligned HiFi reads, assembly contigs, and amplicon consensus.
Authors: John Harting, Zev Kronenberg, Daniel Baker, Matt Holt
If you notice any missing features, bugs, or need assistance with analyzing the output of HiFiHLA, please don't hesitate to open a GitHub issue.
HiFiHLA is a pre-release software intended for research use only and not for use in diagnostic procedures. While efforts have been made to ensure that HiFiHLA lives up to the quality that PacBio strives for, we make no warranty regarding this software.
As HiFiHLA is not covered by any service level agreement or the like, please do not contact a PacBio Field Applications Scientists or PacBio Customer Service for assistance with any HiFiHLA release. Please report all issues through GitHub instead. We make no warranty that any such issue will be addressed, to any extent or within any time frame.
Barker DJ, Maccari G, Georgiou X, Cooper MA, Flicek P, Robinson J, Marsh SGE. The IPD-IMGT/HLA Database. Nucleic Acids Research (2023) 51:D1053-60.
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